Bra035547 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra035547 T268102_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.743 0.785
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.743 0.785
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.743 0.785
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.736 0.753
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.732 0.785
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.732 0.785
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.692 0.753
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.692 0.753
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.692 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035547.1-P Myb 27 74
Bra035547.1-P Myb 80 125

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000003589 Ailuropoda melanoleuca ENSAMEG00000003589 N
ENSNLEG00000016997 Nomascus leucogenys ENSNLEG00000016997 N
ENSOGAG00000006993 Otolemur garnettii ENSOGAG00000006993 N
ENSOPRG00000015310 Ochotona princeps ENSOPRG00000015310 N
ENSPANG00000025096 Papio anubis ENSPANG00000025096 N
ENSPPYG00000009908 Pongo abelii ENSPPYG00000009908 N
ENSPTRG00000024099 Pan troglodytes ENSPTRG00000024099 N
ENSTSYG00000002053 Tarsius syrichta ENSTSYG00000002053 N
ENSTTRG00000013699 Tursiops truncatus ENSTTRG00000013699 N
ENSVPAG00000001201 Vicugna pacos ENSVPAG00000001201 N
ZNF568 Gorilla gorilla ENSGGOG00000006965 N
ZNF568 Homo sapiens ENSG00000198453 N
ZNF568 Erinaceus europaeus ENSEEUG00000002949 N
ZNF568 Equus caballus ENSECAG00000014344 N
ZNF568 Sus scrofa ENSSSCG00000002935 N
ZNF568 Dasypus novemcinctus ENSDNOG00000036634 N
ZNF568 Callithrix jacchus ENSCJAG00000013369 N
ZNF568 Bos taurus ENSBTAG00000021742 N