fgenesh2_kg.3__2684__AT5G58850.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.3__2684__AT5G58850.1 T270773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.672 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__2684__AT5G58850.1 Myb 105 151
fgenesh2_kg.3__2684__AT5G58850.1 Myb 157 202

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001108 Ricinus communis 29646.m001108 N 0.000
AC233853.1_FG002 Zea mays AC233853.1_FG002 N 0.000
Aquca_005_00119 Aquilegia coerulea Aquca_005_00119 N 0.000
Aquca_051_00100 Aquilegia coerulea Aquca_051_00100 N 0.000
ATBZIP34 Arabidopsis lyrata fgenesh2_kg.4__2390__AT2G42380.2 N 0.000
ATBZIP61 Arabidopsis lyrata fgenesh2_kg.5__2254__AT3G58120.1 N 0.000
BGIOSGA007886 Oryza indica BGIOSGA007886 N 0.000
Bo4g015960 Brassica oleracea Bo4g015960 N 0.000
Bo6g074510 Brassica oleracea Bo6g074510 N 0.000
Bo8g092430 Brassica oleracea Bo8g092430 N 0.000
Bostr.18722s0001 Boechera stricta Bostr.18722s0001 N 0.000
Bostr.20903s0063 Boechera stricta Bostr.20903s0063 N 0.000
Bra000256 Brassica rapa Bra000256 N 0.000
Bra003320 Brassica rapa Bra003320 N 0.000
Bra004689 Brassica rapa Bra004689 N 0.000
Bra007380 Brassica rapa Bra007380 N 0.000
BRADI2G06790 Brachypodium distachyon BRADI2G06790 N 0.000
BZIP02 Oryza sativa OS01G0211800 N 0.000
BZIP34 Arabidopsis thaliana AT2G42380 N 0.000
BZIP61 Arabidopsis thaliana AT3G58120 N 0.000
Cagra.0686s0029 Capsella grandiflora Cagra.0686s0029 N 0.000
Cagra.2636s0024 Capsella grandiflora Cagra.2636s0024 N 0.000
Carubv10017617m.g Capsella rubella Carubv10017617m.g N 0.000
Carubv10023644m.g Capsella rubella Carubv10023644m.g N 0.000
cassava15850.m1 Manihot esculenta cassava15850.m1 N 0.000
Ca_02472 Cicer arietinum Ca_02472 N 0.000
Ca_11292 Cicer arietinum Ca_11292 N 0.000
chr3.CM0160.1080.nc Lotus japonicus chr3.CM0160.1080.nc N 0.000
Ciclev10008720m.g Citrus clementina Ciclev10008720m.g N 0.000
Ciclev10015966m.g Citrus clementina Ciclev10015966m.g N 0.000
Cla015875 Citrullus lanatus Cla015875 N 0.000
Cucsa.122790 Cucumis sativus Cucsa.122790 N 0.000
Cucsa.148840 Cucumis sativus Cucsa.148840 N 0.000
Cucsa.309420 Cucumis sativus Cucsa.309420 N 0.000
estExt_fgenesh1_pg.C_160081 Physcomitrella patens estExt_fgenesh1_pg.C_160081 N 0.000
estExt_fgenesh1_pg.C_220219 Physcomitrella patens estExt_fgenesh1_pg.C_220219 N 0.000
Eucgr.K01085 Eucalyptus grandis Eucgr.K01085 N 0.000
gene17796-v1.0-hybrid Fragaria vesca gene17796-v1.0-hybrid N 0.000
gene27194-v1.0-hybrid Fragaria vesca gene27194-v1.0-hybrid N 0.000
GLYMA06G43760 Glycine max GLYMA06G43760 N 0.000
GLYMA12G14130 Glycine max GLYMA12G14130 N 0.000
GLYMA12G33600 Glycine max GLYMA12G33600 N 0.000
GLYMA13G34770 Glycine max GLYMA13G34770 N 0.000
GLYMA13G36870 Glycine max GLYMA13G36870 N 0.000
Gorai.002G064900 Gossypium raimondii Gorai.002G064900 N 0.000
Gorai.013G172500 Gossypium raimondii Gorai.013G172500 N 0.000
GSMUA_Achr4G10560_001 Musa acuminata GSMUA_Achr4G10560_001 N 0.000
GSMUA_Achr6G26930_001 Musa acuminata GSMUA_Achr6G26930_001 N 0.000
GSMUA_Achr9G06540_001 Musa acuminata GSMUA_Achr9G06540_001 N 0.000
LPERR01G06720 Leersia perrieri LPERR01G06720 N 0.000
Lus10002185.g Linum usitatissimum Lus10002185.g N 0.000
Lus10017656.g Linum usitatissimum Lus10017656.g N 0.000
Lus10033630.g Linum usitatissimum Lus10033630.g N 0.000
MDP0000133698 Malus domestica MDP0000133698 N 0.000
MDP0000555457 Malus domestica MDP0000555457 N 0.000
mgf003967m Mimulus guttatus mgf003967m N 0.000
MLOC_72368 Hordeum vulgare MLOC_72368 N 0.000
MTR_2g090900 Medicago truncatula MTR_2g090900 N 0.000
MTR_4g079500 Medicago truncatula MTR_4g079500 N 0.000
OB01G17130 Oryza brachyantha OB01G17130 N 0.000
OBART01G07120 Oryza barthii OBART01G07120 N 0.000
OBART02G10550 Oryza barthii OBART02G10550 N 0.000
OGLUM01G08020 Oryza glumaepatula OGLUM01G08020 N 0.000
OGLUM02G10470 Oryza glumaepatula OGLUM02G10470 N 0.000
OLONG_003093 Oryza longistaminata OLONG_003093 N 0.000
OMERI02G11410 Oryza meridionalis OMERI02G11410 N 0.000
ONIVA01G09160 Oryza nivara ONIVA01G09160 N 0.000
ONIVA02G11660 Oryza nivara ONIVA02G11660 N 0.000
OPUNC01G06850 Oryza punctata OPUNC01G06850 N 0.000
OPUNC01G30390 Oryza punctata OPUNC01G30390 N 0.000
OPUNC02G09400 Oryza punctata OPUNC02G09400 N 0.000
orange1.1g037696m.g Citrus sinensis orange1.1g037696m.g N 0.000
ORGLA02G0094900 Oryza glaberrima ORGLA02G0094900 N 0.000
ORUFI01G07680 Oryza rufipogon ORUFI01G07680 N 0.000
ORUFI02G10470 Oryza rufipogon ORUFI02G10470 N 0.000
Pavir.Eb03400 Panicum virgatum Pavir.Eb03400 N 0.000
Pavir.J05339 Panicum virgatum Pavir.J05339 N 0.000
Pavir.J11397 Panicum virgatum Pavir.J11397 N 0.000
PGSC0003DMG400009388 Solanum tuberosum PGSC0003DMG400009388 N 0.000
PGSC0003DMG401007810 Solanum tuberosum PGSC0003DMG401007810 N 0.000
PK16223.1 Cannabis sativa PK16223.1 N 0.000
PK21227.1 Cannabis sativa PK21227.1 N 0.000
Pm014253 Prunus mume Pm014253 N 0.000
POPTR_0013s12810 Populus trichocarpa POPTR_0013s12810 N 0.000
PRUPE_ppa016271mg Prunus persica PRUPE_ppa016271mg N 0.000
PRUPE_ppa022385mg Prunus persica PRUPE_ppa022385mg N 0.000
SapurV1A.0083s0430 Salix purpurea SapurV1A.0083s0430 N 0.000
SapurV1A.0474s0270 Salix purpurea SapurV1A.0474s0270 N 0.000
SapurV1A.0500s0200 Salix purpurea SapurV1A.0500s0200 N 0.000
SapurV1A.1835s0070 Salix purpurea SapurV1A.1835s0070 N 0.000
SapurV1A.1977s0020 Salix purpurea SapurV1A.1977s0020 N 0.000
Sb03g002050 Sorghum bicolor Sb03g002050 N 0.000
Solyc07g053450.2 Solanum lycopersicum Solyc07g053450.2 N 0.000
Solyc07g062710.2 Solanum lycopersicum Solyc07g062710.2 N 0.000
Solyc12g010800.1 Solanum lycopersicum Solyc12g010800.1 N 0.000
TCM_003607 Theobroma cacao TCM_003607 N 0.000
TCM_031686 Theobroma cacao TCM_031686 N 0.000
Thhalv10006090m.g Eutrema salsugineum Thhalv10006090m.g N 0.000
Thhalv10016923m.g Eutrema salsugineum Thhalv10016923m.g N 0.000
Traes_2BS_C9A338257 Triticum aestivum Traes_2BS_C9A338257 N 0.000
VIT_12s0028g02590 Vitis vinifera VIT_12s0028g02590 N 0.000