CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phatr3_EG01922
(
Phaeodactylum tricornutum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Phatr3_EG01922
T277806_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Thaps24118
M02334_2.00
Thalassiosira pseudonana
NNAYCHDNN
NNHDGRTNN
PBM
Weirauch et al.(2014)
pTH7881
0.901
0.978
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phatr3_EG01922.p1
Myb
117
162
TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Phaeodactylum tricornutum
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29569.m000148
Ricinus communis
29569.m000148
N
Aquca_058_00049
Aquilegia coerulea
Aquca_058_00049
N
AT2G43280
Arabidopsis thaliana
AT2G43280
N
Bo4g194230
Brassica oleracea
Bo4g194230
N
Bra037723
Brassica rapa
Bra037723
N
Bra037724
Brassica rapa
Bra037724
N
Cagra.3706s0015
Capsella grandiflora
Cagra.3706s0015
N
Carubv10024069m.g
Capsella rubella
Carubv10024069m.g
N
cassava19693.m1
Manihot esculenta
cassava19693.m1
N
cassava45111.m1
Manihot esculenta
cassava45111.m1
N
chr3.CM0047.280.nc
Lotus japonicus
chr3.CM0047.280.nc
N
Ciclev10022249m.g
Citrus clementina
Ciclev10022249m.g
N
Cla017785
Citrullus lanatus
Cla017785
N
Cucsa.242980
Cucumis sativus
Cucsa.242980
N
Eucgr.A00087
Eucalyptus grandis
Eucgr.A00087
N
Eucgr.A00281
Eucalyptus grandis
Eucgr.A00281
N
fgenesh2_kg.4__2495__AT2G43280.1
Arabidopsis lyrata
fgenesh2_kg.4__2495__AT2G43280.1
N
gene21668-v1.0-hybrid
Fragaria vesca
gene21668-v1.0-hybrid
N
GLYMA04G12273
Glycine max
GLYMA04G12273
N
GLYMA06G48170
Glycine max
GLYMA06G48170
N
Gorai.005G128700
Gossypium raimondii
Gorai.005G128700
N
MTR_3g006370
Medicago truncatula
MTR_3g006370
N
orange1.1g030419m.g
Citrus sinensis
orange1.1g030419m.g
N
PK06282.1
Cannabis sativa
PK06282.1
N
POPTR_0017s05820
Populus trichocarpa
POPTR_0017s05820
N
PRUPE_ppa011038mg
Prunus persica
PRUPE_ppa011038mg
N
SapurV1A.1606s0030
Salix purpurea
SapurV1A.1606s0030
N
SapurV1A.3204s0030
Salix purpurea
SapurV1A.3204s0030
N
TCM_020035
Theobroma cacao
TCM_020035
N
Thhalv10001648m.g
Eutrema salsugineum
Thhalv10001648m.g
N
VIT_00s0174g00130
Vitis vinifera
VIT_00s0174g00130
N