POPTR_0014s08520 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0014s08520 T278456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s08520.1 Myb 85 130

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29092.m000462 Ricinus communis 29092.m000462 N 0.000
cassava21723.m1 Manihot esculenta cassava21723.m1 N 0.000
Ca_00768 Cicer arietinum Ca_00768 N 0.000
Ciclev10012757m.g Citrus clementina Ciclev10012757m.g N 0.000
Cla017994 Citrullus lanatus Cla017994 N 0.000
Cla018653 Citrullus lanatus Cla018653 N 0.000
Cucsa.083150 Cucumis sativus Cucsa.083150 N 0.000
Cucsa.378470 Cucumis sativus Cucsa.378470 N 0.000
Eucgr.K02071 Eucalyptus grandis Eucgr.K02071 N 0.000
evm.TU.supercontig_5.71 Carica papaya evm.TU.supercontig_5.71 N 0.000
GLYMA03G34970 Glycine max GLYMA03G34970 N 0.000
GLYMA15G02900 Glycine max GLYMA15G02900 N 0.000
GLYMA19G37670 Glycine max GLYMA19G37670 N 0.000
Gorai.002G159400 Gossypium raimondii Gorai.002G159400 N 0.000
Gorai.002G241800 Gossypium raimondii Gorai.002G241800 N 0.000
Gorai.009G407200 Gossypium raimondii Gorai.009G407200 N 0.000
HRD Vitis vinifera VIT_08s0007g03810 N 0.000
LjSGA_035548.1 Lotus japonicus LjSGA_035548.1 N 0.000
Lus10014376.g Linum usitatissimum Lus10014376.g N 0.000
Lus10023873.g Linum usitatissimum Lus10023873.g N 0.000
MDP0000195376 Malus domestica MDP0000195376 N 0.000
orange1.1g039696m.g Citrus sinensis orange1.1g039696m.g N 0.000
PGSC0003DMG400045042 Solanum tuberosum PGSC0003DMG400045042 I 0.000
Pm026227 Prunus mume Pm026227 N 0.000
POPTR_0006s02180 Populus trichocarpa POPTR_0006s02180 N 0.000
POPTR_0016s02010 Populus trichocarpa POPTR_0016s02010 N 0.000
PRUPE_ppa020711mg Prunus persica PRUPE_ppa020711mg N 0.000
SapurV1A.0154s0220 Salix purpurea SapurV1A.0154s0220 N 0.000
SapurV1A.0767s0130 Salix purpurea SapurV1A.0767s0130 N 0.000
Solyc10g083560.1 Solanum lycopersicum Solyc10g083560.1 I 0.000
TCM_022462 Theobroma cacao TCM_022462 N 0.000