snpc-4 (Caenorhabditis elegans)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 WBGene00001568 T282143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
snpc-4
M08151_2.00		 Caenorhabditis elegans
RGCRGCCGACAY
RTGTCGGCYGCY		 ChIP-seq
Mathelier et al.(2014)
MA0544.1		 (Direct) (Direct)
snpc-4
M08216_2.00		 Caenorhabditis elegans
TGAAACAGWDDWWWWT
AWWWWHHWCTGTTTCA		 ChIP-seq
Contrino et al.(2012)
Mw151		 (Direct) (Direct)
snpc-4
M09602_2.00		 Caenorhabditis elegans
CCCGBRARDTGTCGG
CCGACAHYTYVCGGG		 Misc
Heinz et al.(2010)
cElegans-L4-GEI11_modEncode		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
F32H2.1a Myb 250 296
F32H2.1a Myb 301 350
F32H2.1a Myb 409 455
F32H2.1b Myb 250 296
F32H2.1b Myb 301 350
F32H2.1b Myb 409 455

Links

Other Myb/SANT family TFs
Other Caenorhabditis elegans TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP20130 Atta cephalotes ACEP20130 N
ACHR007405 Anopheles christyi ACHR007405 N
BGIBMGA005001 Bombyx mori BGIBMGA005001 N
HDID_0000168801 Hymenolepis diminuta HDID_0000168801 N
Hsal_07635--XP_001607353.1_NASVI Harpegnathos saltator Hsal_07635--XP_001607353.1_NASVI N
LDEC013671 Leptinotarsa decemlineata LDEC013671 N
MESCA009374 Megaselia scalaris MESCA009374 N
PXEA_0002939601 Protopolystoma xenopodis PXEA_0002939601 N
TsM_000472200 Taenia solium TsM_000472200 N
TTAC_0001098701 Hydatigera taeniaeformis TTAC_0001098701 N
YQE_12479 Dendroctonus ponderosae YQE_12479 N