30076.m004464 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30076.m004464 T283864_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.899 0.957
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.891 0.935
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.891 0.935
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.854 0.891
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.854 0.891
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.800 0.826
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.800 0.826
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.800 0.826
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.800 0.826
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.800 0.826
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.767 0.848
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.767 0.848
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.767 0.848
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30076.m004464 Myb 25 70

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA008381 Oryza indica BGIOSGA008381 N 0.000
F775_27241 Aegilops tauschii F775_27241 N 0.000
GRMZM2G134439 Zea mays GRMZM2G134439 N 0.000
GRMZM2G326783 Zea mays GRMZM2G326783 N 0.000
LPERR02G15710 Leersia perrieri LPERR02G15710 N 0.000
MLOC_62598 Hordeum vulgare MLOC_62598 N 0.000
OB02G27300 Oryza brachyantha OB02G27300 N 0.000
OBART02G19580 Oryza barthii OBART02G19580 N 0.000
OGLUM02G19870 Oryza glumaepatula OGLUM02G19870 N 0.000
OLONG_005200 Oryza longistaminata OLONG_005200 N 0.000
OMERI02G19460 Oryza meridionalis OMERI02G19460 N 0.000
ONIVA03G19920 Oryza nivara ONIVA03G19920 N 0.000
OPUNC02G17490 Oryza punctata OPUNC02G17490 N 0.000
ORGLA02G0167800 Oryza glaberrima ORGLA02G0167800 N 0.000
ORUFI02G20630 Oryza rufipogon ORUFI02G20630 N 0.000
OS02G0539600 Oryza sativa OS02G0539600 N 0.000
Pavir.Ab01874 Panicum virgatum Pavir.Ab01874 N 0.000
Pavir.J05591 Panicum virgatum Pavir.J05591 N 0.000
Sb04g005902 Sorghum bicolor Sb04g005902 N 0.000
Si016284m.g Setaria italica Si016284m.g N 0.000
Traes_6AS_0D7F17F06 Triticum aestivum Traes_6AS_0D7F17F06 N 0.000
Traes_6BL_1392D6149 Triticum aestivum Traes_6BL_1392D6149 N 0.000
Traes_6DL_88259C187 Triticum aestivum Traes_6DL_88259C187 N 0.000
TRIUR3_27498 Triticum urartu TRIUR3_27498 N 0.000