Cucsa.112760 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.112760 T284410_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB30
M07089_2.00 		Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN		 Dap-seq
OMalley et al.(2016)
MYB30_col_a 		0.889 0.957
MYB30
M07090_2.00 		Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD		 Dap-seq
OMalley et al.(2016)
MYB30_colamp_a 		0.889 0.957
MYB60
M07001_2.00 		Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND		 Dap-seq
OMalley et al.(2016)
MYB60_col 		0.875 0.957
MYB94
M02298_2.00 		Arabidopsis thaliana
DACCGGTH
DACCGGTH		 PBM
Weirauch et al.(2014)
pTH7085 		0.868 0.946
MYB94
M07094_2.00 		Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD		 Dap-seq
OMalley et al.(2016)
MYB94_col_b 		0.868 0.946
ATY13
M07035_2.00 		Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_col_a 		0.858 0.957
ATY13
M07036_2.00 		Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD		 Dap-seq
OMalley et al.(2016)
ATY13_colamp_a 		0.858 0.957
MYB96
M07153_2.00 		Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD		 Dap-seq
OMalley et al.(2016)
MYB96_colamp_a 		0.850 0.946
MYB96
M07154_2.00 		Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR		 Dap-seq
OMalley et al.(2016)
MYB96_col_b 		0.850 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.112760.1 Myb 15 62
Cucsa.112760.1 Myb 68 113

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

311 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.000
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.000
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.000
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.000
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.000
BGIBMGA010711 Bombyx mori BGIBMGA010711 N 0.000
BTMF_0001478401 Brugia timori BTMF_0001478401 N 0.000
CBG11867 Caenorhabditis briggsae CBG11867 N 0.000
CBN07735 Caenorhabditis brenneri CBN07735 N 0.000
CBN31697 Caenorhabditis brenneri CBN31697 N 0.000
CJA03316 Caenorhabditis japonica CJA03316 N 0.000
CJA30740 Caenorhabditis japonica CJA30740 N 0.000
CRE14258 Caenorhabditis remanei CRE14258 N 0.000
D917_05046 Trichinella nativa D917_05046 N 0.000
D917_05048 Trichinella nativa D917_05048 N 0.000
D918_06015 Trichuris suis D918_06015 N 0.000
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.000
EFV56090 Trichinella spiralis EFV56090 N 0.000
EFV56095 Trichinella spiralis EFV56095 N 0.000
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.000
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.000
L889_g13125 Steinernema feltiae L889_g13125 N 0.000
L898_g14011 Steinernema monticolum L898_g14011 N 0.000
LCUP007789 Lucilia cuprina LCUP007789 N 0.000
MDOA008474 Musca domestica MDOA008474 N 0.000
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.000
Minc06622 Meloidogyne incognita Minc06622 N 0.000
NECAME_01599 Necator americanus NECAME_01599 N 0.000
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.000
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.000
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.000
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.000
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.000
SMAR009325 Strigamia maritima SMAR009325 N 0.000
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 Meloidogyne floridensis snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 N 0.000
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.000
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.000
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.000
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.000
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.000
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.000
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N 0.000
YQE_05481 Dendroctonus ponderosae YQE_05481 N 0.000