CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snap_masked-nMf.1.1.scaf06721-processed-gene-0.5
(
Meloidogyne floridensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5
T336976_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5-mRNA-1
Sox
55
117
AKSKRGYILFSAEVRKRVMNEIPEAKFGEVLEIIGTEWKRLSNEDKRDYVSRARFIAAERAKA
Links
Other
Sox
family TFs
Other
Meloidogyne floridensis
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc06622
Meloidogyne incognita
Minc06622
N
0.515
MhA1_Contig232.frz3.gene23
Meloidogyne hapla
MhA1_Contig232.frz3.gene23
N
0.515
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1
N
0.513
L889_g13125
Steinernema feltiae
L889_g13125
N
0.489
RSKR_0000607700
Rhabditophanes kr3021
RSKR_0000607700
N
0.477
SSTP_0000878000
Strongyloides stercoralis
SSTP_0000878000
N
0.474
pbrm-1
Caenorhabditis elegans
WBGene00007042
N
0.470
PTRK_0001310900
Parastrongyloides trichosuri
PTRK_0001310900
N
0.468
SPAL_0001274100
Strongyloides papillosus
SPAL_0001274100
N
0.468
SVE_0827400
Strongyloides venezuelensis
SVE_0827400
N
0.468
CBN07735
Caenorhabditis brenneri
CBN07735
N
0.461
CBN31697
Caenorhabditis brenneri
CBN31697
N
0.461
CRE14258
Caenorhabditis remanei
CRE14258
N
0.460
scaffold517-EXSNAP2012.7
Pristionchus exspectatus
scaffold517-EXSNAP2012.7
N
0.458
CBG11867
Caenorhabditis briggsae
CBG11867
N
0.433
ACAC_0000973801
Angiostrongylus cantonensis
ACAC_0000973801
N
0.431
ANCCAN_09463
Ancylostoma caninum
ANCCAN_09463
N
0.431
ANCCEY_15064
Ancylostoma ceylanicum
ANCCEY_15064
N
0.431
ANCCEY_15918
Ancylostoma ceylanicum
ANCCEY_15918
N
0.431
ANCDUO_06783
Ancylostoma duodenale
ANCDUO_06783
N
0.431
DICVIV_00270
Dictyocaulus viviparus
DICVIV_00270
N
0.431
HCOI00076900
Haemonchus contortus
HCOI00076900
N
0.431
HCOI01215700
Haemonchus contortus
HCOI01215700
N
0.431
NECAME_01599
Necator americanus
NECAME_01599
N
0.431
OESDEN_01314
Oesophagostomum dentatum
OESDEN_01314
N
0.431
SVUK_0000363901
Strongylus vulgaris
SVUK_0000363901
N
0.431
TELCIR_16246
Teladorsagia circumcincta
TELCIR_16246
N
0.431
L898_g14011
Steinernema monticolum
L898_g14011
N
0.423
CJA03316
Caenorhabditis japonica
CJA03316
N
0.421
CJA30740
Caenorhabditis japonica
CJA30740
N
0.421