est_orfs.8_8223_4279363:1 (Micromonas pusilla)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 est_orfs.8_8223_4279363:1 T284835_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.723 0.783
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.723 0.783
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.723 0.783
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.723 0.783
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.723 0.783
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.723 0.783
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.713 0.761
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.713 0.761
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.713 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
est_orfs.8_8223_4279363:1 Myb 18 63

Links

Other Myb/SANT family TFs
Other Micromonas pusilla TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g009350 Brassica oleracea Bo9g009350 N
Bostr.2128s0072 Boechera stricta Bostr.2128s0072 N
Bostr.5325s0037 Boechera stricta Bostr.5325s0037 N
Bra036179 Brassica rapa Bra036179 N
Bra037494 Brassica rapa Bra037494 N
Cagra.0154s0026 Capsella grandiflora Cagra.0154s0026 N
scaffold_100136.1 Arabidopsis lyrata scaffold_100136.1 N
Thhalv10004420m.g Eutrema salsugineum Thhalv10004420m.g N
TRFL10 Arabidopsis thaliana AT5G03780 N
TRFL10 Arabidopsis lyrata fgenesh2_kg.6__290__AT5G03780.1 N
VIT_12s0057g01490 Vitis vinifera VIT_12s0057g01490 N