fgenesh1_pg.scaffold_198000070 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_198000070 T284897_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.957
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.848
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.891
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.891
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.891
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.674
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.630
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.630
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_198000070 Myb 24 69

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I
Aquca_058_00063 Aquilegia coerulea Aquca_058_00063 I
AT1G06070 Arabidopsis thaliana AT1G06070 D
AT4G38900 Arabidopsis thaliana AT4G38900 I
BGIOSGA029105 Oryza indica BGIOSGA029105 I
BGIOSGA029106 Oryza indica BGIOSGA029106 I
Bo3g149620 Brassica oleracea Bo3g149620 I
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo7g119550 Brassica oleracea Bo7g119550 I
Bo8g005940 Brassica oleracea Bo8g005940 I
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I
Bra010722 Brassica rapa Bra010722 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
Bra033582 Brassica rapa Bra033582 I
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I
Carubv10004500m.g Capsella rubella Carubv10004500m.g N
Carubv10008993m.g Capsella rubella Carubv10008993m.g I
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I
cassava32399.m1 Manihot esculenta cassava32399.m1 I
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I
Ca_02692 Cicer arietinum Ca_02692 I
Ca_27693 Cicer arietinum Ca_27693 I
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I
Cla016124 Citrullus lanatus Cla016124 I
Cla016125 Citrullus lanatus Cla016125 I
Cla022201 Citrullus lanatus Cla022201 I
Cla022204 Citrullus lanatus Cla022204 I
Cucsa.062530 Cucumis sativus Cucsa.062530 I
Cucsa.251880 Cucumis sativus Cucsa.251880 I
Cucsa.382180 Cucumis sativus Cucsa.382180 I
Cucsa.382190 Cucumis sativus Cucsa.382190 I
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I
F775_13434 Aegilops tauschii F775_13434 I
F775_32059 Aegilops tauschii F775_32059 I
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I
GLYMA04G02850 Glycine max GLYMA04G02850 I
GLYMA11G11791 Glycine max GLYMA11G11791 I
GLYMA11G13510 Glycine max GLYMA11G13510 I
GLYMA12G04050 Glycine max GLYMA12G04050 I
GLYMA12G05520 Glycine max GLYMA12G05520 I
GLYMA13G42030 Glycine max GLYMA13G42030 I
GLYMA15G03350 Glycine max GLYMA15G03350 I
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I
Lus10008150.g Linum usitatissimum Lus10008150.g I
Lus10018061.g Linum usitatissimum Lus10018061.g I
Lus10019376.g Linum usitatissimum Lus10019376.g I
Lus10042057.g Linum usitatissimum Lus10042057.g I
MDP0000234166 Malus domestica MDP0000234166 I
MDP0000435971 Malus domestica MDP0000435971 I
mgf000302m Mimulus guttatus mgf000302m I
mgf004912m Mimulus guttatus mgf004912m I
MLOC_64362 Hordeum vulgare MLOC_64362 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
MLOC_75510 Hordeum vulgare MLOC_75510 I
MTR_4g072090 Medicago truncatula MTR_4g072090 I
OB09G23080 Oryza brachyantha OB09G23080 I
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I
PK00843.1 Cannabis sativa PK00843.1 I
PK20942.1 Cannabis sativa PK20942.1 D
Pm007522 Prunus mume Pm007522 I
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I
RF2A Oryza sativa OS09G0516200 I
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I
Sb06g021350 Sorghum bicolor Sb06g021350 I
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I
TCM_006766 Theobroma cacao TCM_006766 I
TCM_019998 Theobroma cacao TCM_019998 I
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I
Traes_7DS_47B5A7FFF Triticum aestivum Traes_7DS_47B5A7FFF I
TRIUR3_16287 Triticum urartu TRIUR3_16287 I
TRIUR3_31242 Triticum urartu TRIUR3_31242 I
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I