gw1.325.30.1 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gw1.325.30.1 T285100_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.877 0.913
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.877 0.913
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.868 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.822 0.848
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.822 0.848
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.813 0.848
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.813 0.848
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.813 0.848
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.813 0.848
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.813 0.848
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.797 0.870
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.781 0.870
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.781 0.870
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.781 0.870
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.325.30.1 Myb 17 62

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_260006 Phytophthora capsici estExt_fgenesh1_kg.C_260006 N
F443_03220 Phytophthora parasitica F443_03220 N
F443_03223 Phytophthora parasitica F443_03223 N
F443_16339 Phytophthora parasitica F443_16339 N
fgenesh1_pg.C_scaffold_26000008 Phytophthora capsici fgenesh1_pg.C_scaffold_26000008 N
fgenesh_scip_prom.28083.12017 Phytophthora lateralis fgenesh_scip_prom.28083.12017 N
fgenesh_scip_prom.28083.12018 Phytophthora lateralis fgenesh_scip_prom.28083.12018 N
fgenesh_scip_prom.46568.8839 Phytophthora kernoviae fgenesh_scip_prom.46568.8839 N
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I
HpaG811475 Hyaloperonospora arabidopsidis HpaG811475 N
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I
maker-pag1_scaffold_151-fgenesh-gene-0.9 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.9 N
maker-par_contig_173-fgenesh-gene-0.4 Pythium arrhenomanes maker-par_contig_173-fgenesh-gene-0.4 N
maker-par_contig_8833-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_8833-fgenesh-gene-0.0 N
maker-pir_contig_142-fgenesh-gene-0.5 Pythium irregulare maker-pir_contig_142-fgenesh-gene-0.5 N
maker-piw_contig_3307-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_3307-fgenesh-gene-0.0 N
maker-pve_contig_603-fgenesh-gene-0.5 Pythium vexans maker-pve_contig_603-fgenesh-gene-0.5 N
maker-pve_contig_603-snap-gene-0.9 Pythium vexans maker-pve_contig_603-snap-gene-0.9 N
Phyra73305 Phytophthora ramorum Phyra73305 N
Phyra73306 Phytophthora ramorum Phyra73306 N
Phyra73414 Phytophthora ramorum Phyra73414 N
Physo131312 Phytophthora sojae Physo131312 N
Physo131313 Phytophthora sojae Physo131313 N
PITG_11731 Phytophthora infestans PITG_11731 N
PITG_19361 Phytophthora infestans PITG_19361 N
PK06453.1 Cannabis sativa PK06453.1 I
PYU1_G003104 Pythium ultimum PYU1_G003104 N