Cagra.4093s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.4093s0003 T286135_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.853 0.971
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.853 0.971
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.778 0.871
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.764 0.856
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.701 0.813
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.670 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4093s0003.1.p Myb 31 77
Cagra.4093s0003.1.p Myb 83 129
Cagra.4093s0003.1.p Myb 135 179

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015824 Calypte anna Aan_R015824 N 0.000
ADNP Pteropus vampyrus ENSPVAG00000016481 N 0.000
ADNP Meleagris gallopavo ENSMGAG00000009385 N 0.000
ADNP Myotis lucifugus ENSMLUG00000000002 N 0.000
ADNP Macaca mulatta ENSMMUG00000002761 N 0.000
ADNP Monodelphis domestica ENSMODG00000016350 N 0.000
Adnp Mus musculus ENSMUSG00000051149 N 0.000
ADNP Ornithorhynchus anatinus ENSOANG00000008675 N 0.000
ADNP Otolemur garnettii ENSOGAG00000005381 N 0.000
ADNP Ochotona princeps ENSOPRG00000002985 N 0.000
ADNP Procavia capensis ENSPCAG00000006836 N 0.000
ADNP Pan troglodytes ENSPTRG00000013623 N 0.000
ADNP Oryctolagus cuniculus ENSOCUG00000014704 N 0.000
Adnp Rattus norvegicus ENSRNOG00000010975 N 0.000
ADNP Sorex araneus ENSSARG00000008308 N 0.000
ADNP Sus scrofa ENSSSCG00000007473 N 0.000
ADNP Tupaia belangeri ENSTBEG00000002890 N 0.000
ADNP Taeniopygia guttata ENSTGUG00000008662 N 0.000
ADNP Tursiops truncatus ENSTTRG00000009011 N 0.000
ADNP Vicugna pacos ENSVPAG00000004917 N 0.000
adnp Xenopus tropicalis XB-GENE-852807 N 0.000
ADNP Bos taurus ENSBTAG00000000340 N 0.000
ADNP Erinaceus europaeus ENSEEUG00000007786 N 0.000
ADNP Cavia porcellus ENSCPOG00000001591 N 0.000
ADNP Callithrix jacchus ENSCJAG00000000563 N 0.000
ADNP Echinops telfairi ENSETEG00000011996 N 0.000
ADNP Choloepus hoffmanni ENSCHOG00000011573 N 0.000
ADNP Canis familiaris ENSCAFG00000011576 N 0.000
ADNP Felis catus ENSFCAG00000025702 N 0.000
ADNP Equus caballus ENSECAG00000009307 N 0.000
ADNP Homo sapiens ENSG00000101126 N 0.000
ADNP Gallus gallus ENSGALG00000007989 N 0.000
ADNP Gorilla gorilla ENSGGOG00000003120 N 0.000
ADNP Loxodonta africana ENSLAFG00000004139 N 0.000
adnpb Danio rerio ENSDARG00000074293 N 0.000
Afo_R003260 Aptenodytes forsteri Afo_R003260 N 0.000
Alligator_sinensis_CCG001710.1 Alligator sinensis Alligator_sinensis_CCG001710.1 N 0.000
Brh_R005456 Buceros rhinoceros Brh_R005456 N 0.000
Cmyd_10017455 Chelonia mydas Cmyd_10017455 N 0.000
ENSAMEG00000013360 Ailuropoda melanoleuca ENSAMEG00000013360 N 0.000
ENSAPLG00000007870 Anas platyrhynchos ENSAPLG00000007870 N 0.000
ENSBTAP00000000445-D1 Bos grunniens ENSBTAP00000000445-D1 N 0.000
ENSCSAG00000015205 Chlorocebus sabaeus ENSCSAG00000015205 N 0.000
ENSDNOG00000001749 Dasypus novemcinctus ENSDNOG00000001749 N 0.000
ENSFALG00000013032 Ficedula albicollis ENSFALG00000013032 N 0.000
ENSLACG00000009474 Latimeria chalumnae ENSLACG00000009474 N 0.000
ENSMEUG00000007857 Macropus eugenii ENSMEUG00000007857 N 0.000
ENSMICG00000015956 Microcebus murinus ENSMICG00000015956 N 0.000
ENSMPUG00000017548 Mustela putorius furo ENSMPUG00000017548 N 0.000
ENSNLEG00000006995 Nomascus leucogenys ENSNLEG00000006995 N 0.000
ENSOARG00000013868 Ovis aries ENSOARG00000013868 N 0.000
ENSP00000360662 Macaca fascicularis ENSP00000360662 N 0.000
ENSPANG00000021104 Papio anubis ENSPANG00000021104 N 0.000
ENSPPYG00000011130 Pongo abelii ENSPPYG00000011130 N 0.000
ENSPSIG00000015209 Pelodiscus sinensis ENSPSIG00000015209 N 0.000
ENSSHAG00000018763 Sarcophilus harrisii ENSSHAG00000018763 N 0.000
ENSSTOG00000023722 Ictidomys tridecemlineatus ENSSTOG00000023722 N 0.000
ENSTSYG00000012059 Tarsius syrichta ENSTSYG00000012059 N 0.000
Myotis_brandtii_ADNP_10026361 Myotis brandtii Myotis_brandtii_ADNP_10026361 N 0.000
Ogr08135 Ophisaurus gracilis Ogr08135 N 0.000
Pvit_03339 Pogona vitticeps Pvit_03339 N 0.000
Tal_R004420 Tyto alba Tal_R004420 N 0.000