Carubv10016934m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10016934m.g T286360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.849 0.979
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.849 0.979
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.841 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016934m Myb 473 523

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
16040_YML099C Saccharomyces mikatae 16040_YML099C I 0.000
17710_YML099C Saccharomyces paradoxus 17710_YML099C I 0.000
18194_YML099C Saccharomyces bayanus 18194_YML099C I 0.000
AACERI_AaceriAAL175W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL175W I 0.000
AGOS_AAL175W Ashbya gossypii AGOS_AAL175W I 0.000
ARG81 Saccharomyces cerevisiae YML099C D 0.000
CAGL0H06875g Candida glabrata CAGL0H06875g I 0.000
CaO19.10262 Candida albicans CaO19.10262 I 0.000
CaO19.2748 Candida albicans CaO19.2748 I 0.000
CD36_42420 Candida dubliniensis CD36_42420 I 0.000
CORT_0E00270 Candida orthopsilosis CORT_0E00270 I 0.000
CPAG_00315 Candida parapsilosis CPAG_00315 I 0.000
CTRG_00138 Candida tropicalis CTRG_00138 I 0.000
DEHA2E16302g Debaryomyces hansenii DEHA2E16302g I 0.000
Ecym_8159 Eremothecium cymbalariae Ecym_8159 I 0.000
e_gww1.1.1.1491.1 Pichia stipitis e_gww1.1.1.1491.1 I 0.000
fgenesh1_pg.sca_32_chr11_3_0000153 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000153 N 0.000
G210_1017 Candida maltosa G210_1017 I 0.000
GNLVRS01_PISO0N20935g Millerozyma farinosa GNLVRS01_PISO0N20935g I 0.000
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I 0.000
KAFR_0L02130 Kazachstania africana KAFR_0L02130 I 0.000
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I 0.000
KLTH0E16500g Lachancea thermotolerans KLTH0E16500g I 0.000
KNAG_0J00210 Kazachstania naganishii KNAG_0J00210 I 0.000
Kpol_455p10 Vanderwaltozyma polyspora Kpol_455p10 I 0.000
Kpol_538p52 Vanderwaltozyma polyspora Kpol_538p52 I 0.000
Kwal_9688 Kluyveromyces waltii Kwal_9688 I 0.000
LALA0_S01e00826g Lachancea lanzarotensis LALA0_S01e00826g I 0.000
LELG_04177 Lodderomyces elongisporus LELG_04177 I 0.000
NCAS_0C00220 Naumovozyma castellii NCAS_0C00220 I 0.000
NDAI_0K00150 Naumovozyma dairenensis NDAI_0K00150 I 0.000
NechaG86758 Fusarium solani NechaG86758 N 0.000
PAS_chr2-1_0029 Komagataella pastoris PAS_chr2-1_0029 I 0.000
PGUG_03209 Candida guilliermondii PGUG_03209 I 0.000
PGUG_03209 Meyerozyma guilliermondii PGUG_03209 I 0.000
PICST_51603 Scheffersomyces stipitis PICST_51603 I 0.000
PV10_02795 Exophiala mesophila PV10_02795 N 0.000
SAKL0D00264g Lachancea kluyveri SAKL0D00264g I 0.000
Scas_Contig626.6 Saccharomyces castellii Scas_Contig626.6 I 0.000
SKUD_195006 Saccharomyces kudriavzevii SKUD_195006 I 0.000
SPAPADRAFT_69629 Spathaspora passalidarum SPAPADRAFT_69629 I 0.000
SU7_2431 Saccharomyces arboricola SU7_2431 I 0.000
TDEL_0B00480 Torulaspora delbrueckii TDEL_0B00480 I 0.000
TRIATDRAFT_141953 Trichoderma atroviride TRIATDRAFT_141953 I 0.000
XP_002490909.1 Pichia pastoris XP_002490909.1 I 0.000
YALI0_D09647g Yarrowia lipolytica YALI0_D09647g I 0.000
ZBAI_03002 Zygosaccharomyces bailii ZBAI_03002 I 0.000
ZBAI_08687 Zygosaccharomyces bailii ZBAI_08687 I 0.000
ZYRO0A00440g Zygosaccharomyces rouxii ZYRO0A00440g I 0.000