Carubv10026895m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026895m.g T286456_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05090
M02305_2.00 		Arabidopsis thaliana
NHAGATHCKNN
NNMGDATCTDN		 PBM
Weirauch et al.(2014)
pTH7104 		0.825 0.936
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.665 0.681
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.665 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026895m Myb 139 189

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014242 Ricinus communis 30147.m014242 I
30174.m008818 Ricinus communis 30174.m008818 I
cassava14164.m1 Manihot esculenta cassava14164.m1 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I
cassava21316.m1 Manihot esculenta cassava21316.m1 I
cassava47027.m1 Manihot esculenta cassava47027.m1 N
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I
Cla001400 Citrullus lanatus Cla001400 I
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I
Lus10038929.g Linum usitatissimum Lus10038929.g N
mgf021094m Mimulus guttatus mgf021094m I
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I