Pavir.Gb00859 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb00859 T289229_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.734 0.761
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.734 0.761
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.734 0.761
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.734 0.761
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.734 0.761
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.729 0.739
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.716 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.716 0.804
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.709 0.783
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.709 0.783
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.709 0.783
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.707 0.761
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.661 0.696
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.661 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00859.1.p Myb 51 96

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004464 Ricinus communis 30076.m004464 I 0.716
AMTR_s00001p00272270 Amborella trichopoda AMTR_s00001p00272270 I 0.716
BGIOSGA005828 Oryza indica BGIOSGA005828 I 0.785
BGIOSGA014483 Oryza indica BGIOSGA014483 I 0.838
Bo2g013560 Brassica oleracea Bo2g013560 I 0.680
Bo3g012470 Brassica oleracea Bo3g012470 I 0.682
Bo5g002760 Brassica oleracea Bo5g002760 I 0.716
Bo9g161410 Brassica oleracea Bo9g161410 I 0.740
Bostr.2618s0066 Boechera stricta Bostr.2618s0066 I 0.709
Bostr.5325s0026 Boechera stricta Bostr.5325s0026 I 0.716
Bra006394 Brassica rapa Bra006394 I 0.668
Bra008563 Brassica rapa Bra008563 I 0.680
Bra023610 Brassica rapa Bra023610 I 0.680
Bra033291 Brassica rapa Bra033291 I 0.716
Cagra.1968s0051 Capsella grandiflora Cagra.1968s0051 I 0.716
Cagra.4849s0004 Capsella grandiflora Cagra.4849s0004 I 0.698
Carubv10001147m.g Capsella rubella Carubv10001147m.g I 0.698
Carubv10008551m.g Capsella rubella Carubv10008551m.g I 0.716
cassava36126.valid.m1 Manihot esculenta cassava36126.valid.m1 I 0.716
Ca_14385 Cicer arietinum Ca_14385 I 0.704
CHLREDRAFT_123164 Chlamydomonas reinhardtii CHLREDRAFT_123164 I
chr3.CM0208.410.nd Lotus japonicus chr3.CM0208.410.nd I 0.714
Ciclev10018964m.g Citrus clementina Ciclev10018964m.g I 0.714
Cucsa.349800 Cucumis sativus Cucsa.349800 I 0.716
estExt_fgenesh2_pg.C_Chr_080053 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_080053 I 0.714
Eucgr.D02651 Eucalyptus grandis Eucgr.D02651 I 0.716
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I 0.684
evm.TU.supercontig_1055.1 Carica papaya evm.TU.supercontig_1055.1 I 0.716
evm.TU.supercontig_178.22 Carica papaya evm.TU.supercontig_178.22 I 0.698
e_gw1.96.88.1 Physcomitrella patens e_gw1.96.88.1 I 0.730
fgeneshCV_pg.C_scaffold_1000277 Chlorella vulgaris fgeneshCV_pg.C_scaffold_1000277 I 0.738
Genemark1.422_g Coccomyxa subellipsoidea C169 Genemark1.422_g I 0.738
GLYMA02G40800 Glycine max GLYMA02G40800 I 0.704
GLYMA03G42260 Glycine max GLYMA03G42260 I 0.716
GLYMA07G05410 Glycine max GLYMA07G05410 I 0.716
GLYMA11G33180 Glycine max GLYMA11G33180 I 0.704
GLYMA14G39130 Glycine max GLYMA14G39130 I 0.704
GLYMA16G01980 Glycine max GLYMA16G01980 I 0.716
GLYMA18G05050 Glycine max GLYMA18G05050 I 0.704
GLYMA19G45030 Glycine max GLYMA19G45030 I 0.716
Gorai.007G113900 Gossypium raimondii Gorai.007G113900 I 0.716
Gorai.008G131800 Gossypium raimondii Gorai.008G131800 I 0.698
Gorai.008G132000 Gossypium raimondii Gorai.008G132000 I 0.716
GSMUA_Achr10G06560_001 Musa acuminata GSMUA_Achr10G06560_001 I 0.716
GSMUA_Achr8G13440_001 Musa acuminata GSMUA_Achr8G13440_001 I 0.790
GSMUA_AchrUn_randomG02340_001 Musa acuminata GSMUA_AchrUn_randomG02340_001 I 0.730
gw1.325.30.1 Physcomitrella patens gw1.325.30.1 I 0.730
gw1.6.1363.1 Ostreococcus RCC809 gw1.6.1363.1 I 0.753
LHY Arabidopsis thaliana AT1G01060 D 0.716
LjSGA_026437.1 Lotus japonicus LjSGA_026437.1 I 0.695
LPERR04G18770 Leersia perrieri LPERR04G18770 I 0.838
Lus10005134.g Linum usitatissimum Lus10005134.g I 0.682
Lus10010100.g Linum usitatissimum Lus10010100.g I 0.682
Lus10030184.g Linum usitatissimum Lus10030184.g I 0.682
mgf014004m Mimulus guttatus mgf014004m I 0.714
MTR_7g118330 Medicago truncatula MTR_7g118330 I 0.716
OB04G29880 Oryza brachyantha OB04G29880 I 0.838
OBART02G28240 Oryza barthii OBART02G28240 I 0.785
OBART04G23030 Oryza barthii OBART04G23030 I 0.838
OGLUM02G28780 Oryza glumaepatula OGLUM02G28780 I 0.785
OGLUM04G22920 Oryza glumaepatula OGLUM04G22920 I 0.838
OLONG_003280 Oryza longistaminata OLONG_003280 I 0.785
OLONG_010266 Oryza longistaminata OLONG_010266 I 0.838
OMERI02G27330 Oryza meridionalis OMERI02G27330 I 0.785
OMERI04G19240 Oryza meridionalis OMERI04G19240 I 0.838
ONIVA04G22180 Oryza nivara ONIVA04G22180 I 0.838
ONIVA09G03730 Oryza nivara ONIVA09G03730 I 0.785
OPUNC04G20560 Oryza punctata OPUNC04G20560 I 0.838
orange1.1g004262m.g Citrus sinensis orange1.1g004262m.g I 0.714
ORGLA02G0242600 Oryza glaberrima ORGLA02G0242600 I 0.785
ORUFI02G29720 Oryza rufipogon ORUFI02G29720 I 0.785
ORUFI04G24740 Oryza rufipogon ORUFI04G24740 I 0.838
OS02G0685200 Oryza sativa OS02G0685200 I 0.785
OS04G0583900 Oryza sativa OS04G0583900 I 0.838
OSTLU_5960 Ostreococcus lucimarinus OSTLU_5960 I 0.727
Pavir.J10427 Panicum virgatum Pavir.J10427 I 0.909
PGSC0003DMG400011294 Solanum tuberosum PGSC0003DMG400011294 I 0.716
PK20866.1 Cannabis sativa PK20866.1 I 0.716
Pm028731 Prunus mume Pm028731 I 0.716
Pm028732 Prunus mume Pm028732 I 0.682
POPTR_0002s18170 Populus trichocarpa POPTR_0002s18170 I 0.716
PRUPE_ppa001765mg Prunus persica PRUPE_ppa001765mg I 0.716
PRUPE_ppa004107mg Prunus persica PRUPE_ppa004107mg I 0.682
RVE1 Arabidopsis thaliana AT5G17300 D 0.709
RVE1 Arabidopsis lyrata fgenesh2_kg.6__1729__AT5G17300.1 I 0.709
SapurV1A.0003s0380 Salix purpurea SapurV1A.0003s0380 I 0.716
SapurV1A.0162s0390 Salix purpurea SapurV1A.0162s0390 I 0.716
Sb06g026500 Sorghum bicolor Sb06g026500 I 0.909
SELMODRAFT_19475 Selaginella moellendorffii SELMODRAFT_19475 I 0.730
SELMODRAFT_29451 Selaginella moellendorffii SELMODRAFT_29451 I 0.730
Si010077m.g Setaria italica Si010077m.g I 0.909
Solyc10g005080.2 Solanum lycopersicum Solyc10g005080.2 I 0.716
TCM_005021 Theobroma cacao TCM_005021 I 0.716
Thhalv10007028m.g Eutrema salsugineum Thhalv10007028m.g I 0.716
Thhalv10013821m.g Eutrema salsugineum Thhalv10013821m.g I 0.680
VIT_15s0048g02410 Vitis vinifera VIT_15s0048g02410 I 0.716