Pavir.J08977 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J08977 T289350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J08977.1.p Myb 54 103

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30005.m001261 Ricinus communis 30005.m001261 N 0.701
Aquca_108_00051 Aquilegia coerulea Aquca_108_00051 N
BGIOSGA014805 Oryza indica BGIOSGA014805 N 0.837
Bo1g147290 Brassica oleracea Bo1g147290 N
Bo3g061340 Brassica oleracea Bo3g061340 N
Bra001258 Brassica rapa Bra001258 N
Bra029658 Brassica rapa Bra029658 N
Bra040015 Brassica rapa Bra040015 N
cassava24109.valid.m1 Manihot esculenta cassava24109.valid.m1 N
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N 0.709
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N
Cla012999 Citrullus lanatus Cla012999 N 0.689
F775_32546 Aegilops tauschii F775_32546 N 0.810
Gorai.004G060500 Gossypium raimondii Gorai.004G060500 N
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N 0.693
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N
Gorai.N001000 Gossypium raimondii Gorai.N001000 N
GRMZM2G053557 Zea mays GRMZM2G053557 N 0.765
GSMUA_Achr3G19260_001 Musa acuminata GSMUA_Achr3G19260_001 N 0.686
GSMUA_Achr6G28720_001 Musa acuminata GSMUA_Achr6G28720_001 N
GSMUA_Achr9G08210_001 Musa acuminata GSMUA_Achr9G08210_001 N
LPERR04G13890 Leersia perrieri LPERR04G13890 N 0.802
Lus10025581.g Linum usitatissimum Lus10025581.g N
Lus10025582.g Linum usitatissimum Lus10025582.g N
Lus10027045.g Linum usitatissimum Lus10027045.g N
mgf025428m Mimulus guttatus mgf025428m N 0.705
OBART04G17310 Oryza barthii OBART04G17310 N 0.837
OGLUM04G17350 Oryza glumaepatula OGLUM04G17350 N 0.837
OLONG_009317 Oryza longistaminata OLONG_009317 N 0.837
OMERI04G14610 Oryza meridionalis OMERI04G14610 N 0.837
ONIVA04G15620 Oryza nivara ONIVA04G15620 N 0.837
OPUNC04G15120 Oryza punctata OPUNC04G15120 N 0.848
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N 0.716
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N
ORGLA04G0144300 Oryza glaberrima ORGLA04G0144300 N 0.837
ORUFI04G18740 Oryza rufipogon ORUFI04G18740 N 0.837
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N 0.866
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N 0.733
Sb06g021360 Sorghum bicolor Sb06g021360 N 0.817
Si010917m.g Setaria italica Si010917m.g N 0.866
TCM_002550 Theobroma cacao TCM_002550 N 0.711
TCM_019960 Theobroma cacao TCM_019960 N
TCM_019968 Theobroma cacao TCM_019968 N
Thhalv10021333m.g Eutrema salsugineum Thhalv10021333m.g N
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N 0.802
Traes_2DL_B72450387 Triticum aestivum Traes_2DL_B72450387 N 0.810