Bra006257 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra006257 T292544_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.923 0.596
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.923 0.596
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.880 0.500
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.880 0.500
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006257.1-P NAC/NAM 65 202

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001046 Ricinus communis 29738.m001046 I 0.898
ANAC010 Arabidopsis lyrata scaffold_103183.1 I 0.880
ANAC010 Vitis vinifera VIT_10s0003g00350 I 0.883
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N 0.977
anac044 Arabidopsis thaliana AT3G01600 N 0.977
ANAC073 Arabidopsis lyrata Al_scaffold_0007_1273 I 0.923
anac085 Arabidopsis lyrata Al_scaffold_0006_1351 I 0.978
anac085 Arabidopsis thaliana AT5G14490 I 0.986
Bo1g017410 Brassica oleracea Bo1g017410 I 0.923
Bo5g055990 Brassica oleracea Bo5g055990 I 0.880
Bo7g113170 Brassica oleracea Bo7g113170 I 0.892
Bostr.12659s0396 Boechera stricta Bostr.12659s0396 I 0.880
Bostr.1460s0050 Boechera stricta Bostr.1460s0050 N 0.976
Bostr.2902s0186 Boechera stricta Bostr.2902s0186 I 0.987
Bostr.7867s0691 Boechera stricta Bostr.7867s0691 I 0.877
Bra001000 Brassica rapa Bra001000 N 0.937
Bra011034 Brassica rapa Bra011034 I 0.923
Bra024197 Brassica rapa Bra024197 I 0.918
Bra032910 Brassica rapa Bra032910 I 0.880
Cagra.11546s0003 Capsella grandiflora Cagra.11546s0003 I 0.878
Cagra.1225s0041 Capsella grandiflora Cagra.1225s0041 I 0.923
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N 0.977
Cagra.1822s0012 Capsella grandiflora Cagra.1822s0012 I 0.880
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I 0.986
Carubv10002665m.g Capsella rubella Carubv10002665m.g I 0.986
Carubv10005324m.g Capsella rubella Carubv10005324m.g I 0.923
Carubv10009087m.g Capsella rubella Carubv10009087m.g I 0.878
Carubv10009638m.g Capsella rubella Carubv10009638m.g I 0.880
Carubv10014004m.g Capsella rubella Carubv10014004m.g N 0.971
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I 0.898
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.936
Ca_02457 Cicer arietinum Ca_02457 I 0.884
Ca_06348 Cicer arietinum Ca_06348 I 0.879
Ca_11273 Cicer arietinum Ca_11273 I 0.884
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.904
chr3.CM0160.860.nd Lotus japonicus chr3.CM0160.860.nd I 0.880
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.910
Ciclev10031598m.g Citrus clementina Ciclev10031598m.g I 0.944
Cla004701 Citrullus lanatus Cla004701 I 0.946
Cla009808 Citrullus lanatus Cla009808 I 0.871
Cla020673 Citrullus lanatus Cla020673 I 0.892
Cucsa.011210 Cucumis sativus Cucsa.011210 I 0.933
Cucsa.126960 Cucumis sativus Cucsa.126960 I 0.885
Cucsa.283900 Cucumis sativus Cucsa.283900 I 0.892
Eucgr.E03226 Eucalyptus grandis Eucgr.E03226 I 0.887
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.888
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I 0.905
gene29766-v1.0-hybrid Fragaria vesca gene29766-v1.0-hybrid I 0.901
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.910
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.899
GLYMA06G44250 Glycine max GLYMA06G44250 I 0.884
GLYMA07G32250 Glycine max GLYMA07G32250 I 0.879
GLYMA12G13710 Glycine max GLYMA12G13710 I 0.887
GLYMA12G33460 Glycine max GLYMA12G33460 I 0.883
GLYMA13G24320 Glycine max GLYMA13G24320 I 0.879
GLYMA13G36980 Glycine max GLYMA13G36980 I 0.883
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.903
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.926
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.915
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.897
Gorai.010G157600 Gossypium raimondii Gorai.010G157600 I 0.887
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.921
GSMUA_Achr6G11230_001 Musa acuminata GSMUA_Achr6G11230_001 I 0.930
Lus10003668.g Linum usitatissimum Lus10003668.g N 0.899
Lus10021708.g Linum usitatissimum Lus10021708.g I 0.912
MDP0000276278 Malus domestica MDP0000276278 I 0.885
MDP0000309351 Malus domestica MDP0000309351 I 0.885
mgf012882m Mimulus guttatus mgf012882m I 0.876
MTR_1g093670 Medicago truncatula MTR_1g093670 I 0.932
MTR_1g093680 Medicago truncatula MTR_1g093680 I 0.893
MTR_2g090735 Medicago truncatula MTR_2g090735 I 0.879
MTR_4g078875 Medicago truncatula MTR_4g078875 I 0.888
MTR_4g088245 Medicago truncatula MTR_4g088245 I 0.878
MTR_5g053430 Medicago truncatula MTR_5g053430 I 0.923
MTR_7g033320 Medicago truncatula MTR_7g033320 I 0.888
MTR_8g069160 Medicago truncatula MTR_8g069160 I 0.878
NAC010 Arabidopsis thaliana AT1G28470 D 0.880
NAC073 Arabidopsis thaliana AT4G28500 D 0.923
orange1.1g014310m.g Citrus sinensis orange1.1g014310m.g I 0.948
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I 0.877
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.902
Pavir.Db01100 Panicum virgatum Pavir.Db01100 I 0.899
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I 0.936
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I 0.887
PGSC0003DMG400009381 Solanum tuberosum PGSC0003DMG400009381 I 0.886
PGSC0003DMG400031753 Solanum tuberosum PGSC0003DMG400031753 I 0.871
PK17141.1 Cannabis sativa PK17141.1 I 0.911
PK25812.1 Cannabis sativa PK25812.1 I 0.932
Pm010104 Prunus mume Pm010104 I 0.885
Pm029010 Prunus mume Pm029010 I 0.908
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.922
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I 0.895
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I 0.912
PRUPE_ppa005648mg Prunus persica PRUPE_ppa005648mg I 0.897
PRUPE_ppa008828mg Prunus persica PRUPE_ppa008828mg I 0.890
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.900
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I 0.915
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.885
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.885
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I 0.915
Si006639m.g Setaria italica Si006639m.g I 0.873
Si019444m.g Setaria italica Si019444m.g I 0.877
SOG1 Arabidopsis thaliana AT1G25580 I 0.878
SOG1 Arabidopsis lyrata scaffold_102939.1 I 0.878
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.894
Solyc02g077610.2 Solanum lycopersicum Solyc02g077610.2 I 0.876
Solyc07g053590.2 Solanum lycopersicum Solyc07g053590.2 I 0.884
TCM_011869 Theobroma cacao TCM_011869 I 0.903
TCM_016984 Theobroma cacao TCM_016984 I 0.910
TCM_029798 Theobroma cacao TCM_029798 I 0.880
Thhalv10007551m.g Eutrema salsugineum Thhalv10007551m.g I 0.872
Thhalv10008249m.g Eutrema salsugineum Thhalv10008249m.g I 0.880
Thhalv10015728m.g Eutrema salsugineum Thhalv10015728m.g N 0.968
Thhalv10022099m.g Eutrema salsugineum Thhalv10022099m.g N 0.973
Thhalv10025819m.g Eutrema salsugineum Thhalv10025819m.g I 0.919
Traes_5BL_3BA7EA9A3 Triticum aestivum Traes_5BL_3BA7EA9A3 I 0.885
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I 0.875
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I 0.875
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.906