CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla014492
(
Citrullus lanatus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cla014492
T296573_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC037
M07187_2.00
Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG
Dap-seq
OMalley et al.(2016)
VND1_col_a
0.964
0.827
ANAC076
M07224_2.00
Arabidopsis thaliana
TRCKTVHNNHNYAMG
CKTRNDNNDBAMGYA
Dap-seq
OMalley et al.(2016)
VND2_col_a
0.961
0.818
ANAC076
M07225_2.00
Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN
NNNDTDRCKTRNDNNDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND2_colamp_a
0.961
0.818
NAC105
M00980_2.00
Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN
PBM
Lindemose et al.(2014)
VND3
0.931
0.745
NAC105
M07245_2.00
Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN
Dap-seq
OMalley et al.(2016)
VND3_colamp_a
0.931
0.745
NAC105
M07246_2.00
Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA
Dap-seq
OMalley et al.(2016)
VND3_col
0.931
0.745
NAC007
M07164_2.00
Arabidopsis thaliana
TTRCKTVHDNNNYAMG
CKTRNNNHDBAMGYAA
Dap-seq
OMalley et al.(2016)
VND4_colamp_a
0.925
0.727
NAC007
M07165_2.00
Arabidopsis thaliana
TGCKTVHDNHDYAMG
CKTRHDNHDBAMGCA
Dap-seq
OMalley et al.(2016)
VND4_col
0.925
0.727
NAC030
M00974_2.00
Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN
PBM
Lindemose et al.(2014)
VND7
0.875
0.682
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla014492
NAC/NAM
10
147
PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKDIDLYRIEPWDLQEKCWIGYEEQNEWYFFSHKDKKYPTGTRTNRATLAGFWKATGRDKAVYDKNKLIGMRKTLEEGWVVCRAFKKRTTGQSKTSVVERWDSSYFY
Links
Other
NAC/NAM
family TFs
Other
Citrullus lanatus
TFs
325 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy