CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.043420 *(Cucumis sativus)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02365 (NAM)	IPR003441	Cucsa.043420	T296945_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NAC037 M07187_2.00	Arabidopsis thaliana	CKTVNDNHNYAMG	CKTRNDNHNBAMG	Dap-seq OMalley et al.(2016) VND1_col_a	0.969	0.939
ANAC076 M07224_2.00	Arabidopsis thaliana	TRCKTVHNNHNYAMG	CKTRNDNNDBAMGYA	Dap-seq OMalley et al.(2016) VND2_col_a	0.966	0.956
ANAC076 M07225_2.00	Arabidopsis thaliana	TTGCKTVHNNHNYAMGYHAHNNN	NNNDTDRCKTRNDNNDBAMGCAA	Dap-seq OMalley et al.(2016) VND2_colamp_a	0.966	0.956
NAC105 M00980_2.00	Arabidopsis thaliana	NYWHKNHWNN	NNWDNMDWRN	PBM Lindemose et al.(2014) VND3	0.941	0.860
NAC105 M07245_2.00	Arabidopsis thaliana	NTTGCTTVNNNHNYAMG	CKTRNDNNNBAAGCAAN	Dap-seq OMalley et al.(2016) VND3_colamp_a	0.941	0.860
NAC105 M07246_2.00	Arabidopsis thaliana	TTGCTTVHNNHNYAMG	CKTRNDNNDBAAGCAA	Dap-seq OMalley et al.(2016) VND3_col	0.941	0.860
NAC007 M07164_2.00	Arabidopsis thaliana	TTRCKTVHDNNNYAMG	CKTRNNNHDBAMGYAA	Dap-seq OMalley et al.(2016) VND4_colamp_a	0.934	0.851
NAC007 M07165_2.00	Arabidopsis thaliana	TGCKTVHDNHDYAMG	CKTRHDNHDBAMGCA	Dap-seq OMalley et al.(2016) VND4_col	0.934	0.851
NAC030 M00974_2.00	Arabidopsis thaliana	NYACGBMWNN	NNWKVCGTRN	PBM Lindemose et al.(2014) VND7	0.890	0.789
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.043420.1	NAC/NAM	10	137	PPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKDIDLYRIEPWDLQEKCWIGYEEQNEWYFFSHKDKKYPTGTRTNRATLAGFWKATGRDKAVYDKNKLIGMRKTLVFYRGRAPNGQKTDWIMHEYRL

Links
Other NAC/NAM family TFs
Other *Cucumis sativus* TFs

342 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30169.m006375	Ricinus communis	30169.m006375	N	0.000
BRADI4G33820	Brachypodium distachyon	BRADI4G33820	N	0.000
Ciclev10014485m.g	Citrus clementina	Ciclev10014485m.g	N	0.000
Cla008662	Citrullus lanatus	Cla008662	N	0.000
Gorai.010G127900	Gossypium raimondii	Gorai.010G127900	N	0.000
orange1.1g005668m.g	Citrus sinensis	orange1.1g005668m.g	N	0.000
Pm028194	Prunus mume	Pm028194	N	0.000
TCM_040405	Theobroma cacao	TCM_040405	N	0.000