kni (Drosophila melanogaster)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 FBgn0001320 T305271_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kni
M06419_2.00		 Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320		 (Direct) (Direct)
kni
M06420_2.00		 Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320		 (Direct) (Direct)
kni
M06421_2.00		 Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320		 (Direct) (Direct)
kni
M06557_2.00		 Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1		 (Direct) (Direct)
kni
M08225_2.00		 Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24		 (Direct) (Direct)
kni
M09687_2.00		 Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni		 (Direct) (Direct)
kni
M11189_2.00		 Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.983 0.871
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.981 0.857
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.981 0.857
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.981 0.857
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.958 0.800
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.958 0.800
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0077941 Nuclear receptor 3 73
FBpp0311151 Nuclear receptor 8 78

Links

Other Nuclear receptor family TFs
Other Drosophila melanogaster TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00575 Aegilops tauschii F775_00575 N
F775_02635 Aegilops tauschii F775_02635 N
MLOC_25058 Hordeum vulgare MLOC_25058 N
OBART01G08400 Oryza barthii OBART01G08400 N
ONIVA01G11020 Oryza nivara ONIVA01G11020 N
ORUFI01G09250 Oryza rufipogon ORUFI01G09250 N
TRAES3BF020500010CFD_g Triticum aestivum TRAES3BF020500010CFD_g N
TRAES3BF020500020CFD_g Triticum aestivum TRAES3BF020500020CFD_g N
Traes_2AS_FC3F1F39A Triticum aestivum Traes_2AS_FC3F1F39A N
Traes_2BS_E29F278C4 Triticum aestivum Traes_2BS_E29F278C4 N
Traes_2DS_6584E8617 Triticum aestivum Traes_2DS_6584E8617 N
Traes_3AS_16C02FAE7 Triticum aestivum Traes_3AS_16C02FAE7 N
Traes_3B_30A3E17C6 Triticum aestivum Traes_3B_30A3E17C6 N
Traes_3DS_ECB844CBC Triticum aestivum Traes_3DS_ECB844CBC N
TRIUR3_28399 Triticum urartu TRIUR3_28399 N