D918_01741 (Trichuris suis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 D918_01741 T308432_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.947 0.800
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.947 0.800
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.947 0.800
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.947 0.800
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.947 0.800
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.947 0.800
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.947 0.800
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.947 0.800
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.947 0.800
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.947 0.800
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.947 0.800
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.947 0.800
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.947 0.800
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.928 0.757
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.928 0.757
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.928 0.757
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.928 0.757
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.928 0.757
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.927 0.729
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.922 0.586
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.843 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_01741 Nuclear receptor 38 107

Links

Other Nuclear receptor family TFs
Other Trichuris suis TFs

338 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011605 Calypte anna Aan_R011605 I
Afo_R007931 Aptenodytes forsteri Afo_R007931 I
Alligator_sinensis_CCG008004.1 Alligator sinensis Alligator_sinensis_CCG008004.1 I
Aqu1.225687 Amphimedon queenslandica Aqu1.225687 N
Aqu1.225688 Amphimedon queenslandica Aqu1.225688 N
ATF4 Loxodonta africana ENSLAFG00000012020 I
ATF4 Tursiops truncatus ENSTTRG00000014581 I
ATF4 Monodelphis domestica ENSMODG00000009380 I
Atf4 Mus musculus ENSMUSG00000042406 D
ATF4 Ornithorhynchus anatinus ENSOANG00000011026 I
ATF4 Otolemur garnettii ENSOGAG00000033566 I
ATF4 Procavia capensis ENSPCAG00000004089 I
ATF4 Pan troglodytes ENSPTRG00000014398 I
ATF4 Pteropus vampyrus ENSPVAG00000015476 I
Atf4 Rattus norvegicus ENSRNOG00000017801 I
ATF4 Sus scrofa ENSSSCG00000000084 I
ATF4 Tupaia belangeri ENSTBEG00000005052 I
ATF4 Taeniopygia guttata ENSTGUG00000010225 I
ATF4 Felis catus ENSFCAG00000009288 I
ATF4 Cavia porcellus ENSCPOG00000022485 I
Atf4 Dipodomys ordii ENSDORG00000004952 I
ATF4 Equus caballus ENSECAG00000006931 I
ATF4 Callithrix jacchus ENSCJAG00000002594 I
ATF4 Choloepus hoffmanni ENSCHOG00000008739 I
ATF4 Homo sapiens ENSG00000128272 D
ATF4 Canis familiaris ENSCAFG00000001324 I
ATF4 Bos taurus ENSBTAG00000017462 I
ATF4 Gallus gallus ENSGALG00000012135 I
Brh_R011254 Buceros rhinoceros Brh_R011254 I
Cmyd_10007892 Chelonia mydas Cmyd_10007892 I
ENSAMEG00000010932 Ailuropoda melanoleuca ENSAMEG00000010932 I
ENSAPLG00000001773 Anas platyrhynchos ENSAPLG00000001773 I
ENSBTAP00000023213-D1 Bos grunniens ENSBTAP00000023213-D1 I
ENSCSAG00000006330 Chlorocebus sabaeus ENSCSAG00000006330 I
ENSDNOG00000030854 Dasypus novemcinctus ENSDNOG00000030854 I
ENSDNOG00000046837 Dasypus novemcinctus ENSDNOG00000046837 I
ENSFALG00000012313 Ficedula albicollis ENSFALG00000012313 I
ENSGGOG00000010115 Gorilla gorilla ENSGGOG00000010115 I
ENSLACG00000003943 Latimeria chalumnae ENSLACG00000003943 I
ENSMEUG00000011209 Macropus eugenii ENSMEUG00000011209 I
ENSMICG00000011448 Microcebus murinus ENSMICG00000011448 I
ENSMLUG00000027798 Myotis lucifugus ENSMLUG00000027798 I
ENSMMUG00000004499 Macaca mulatta ENSMMUG00000004499 I
ENSMPUG00000009865 Mustela putorius furo ENSMPUG00000009865 I
ENSMPUG00000013386 Mustela putorius furo ENSMPUG00000013386 I
ENSNLEG00000015257 Nomascus leucogenys ENSNLEG00000015257 I
ENSOARG00000016775 Ovis aries ENSOARG00000016775 I
ENSP00000384587 Macaca fascicularis ENSP00000384587 I
ENSPANG00000025194 Papio anubis ENSPANG00000025194 I
ENSPPYG00000011842 Pongo abelii ENSPPYG00000011842 I
ENSPSIG00000011085 Pelodiscus sinensis ENSPSIG00000011085 I
ENSSHAG00000014069 Sarcophilus harrisii ENSSHAG00000014069 I
ENSSTOG00000025355 Ictidomys tridecemlineatus ENSSTOG00000025355 I
Gfo_R004722 Geospiza fortis Gfo_R004722 I
HelroG147362 Helobdella robusta HelroG147362 N
Myotis_brandtii_ATF4_10014009 Myotis brandtii Myotis_brandtii_ATF4_10014009 I
Ogr14426 Ophisaurus gracilis Ogr14426 I
Pvit_04694 Pogona vitticeps Pvit_04694 I
Tal_R009484 Tyto alba Tal_R009484 I