CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf13190-augustus-gene-0.3
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
maker-nMf.1.1.scaf13190-augustus-gene-0.3
T309593_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf13190-augustus-gene-0.3-mRNA-1
Nuclear receptor
7
78
NKCQVCDSSLNVSHQFNVNCCRVCAAFFKIYLKNKKQKFECKCLTTFGKIKLRLIDCERCYLNKCLSVGMKD
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc05571
Meloidogyne incognita
Minc05571
N
0.813
Minc17901
Meloidogyne incognita
Minc17901
N
0.959
snap_masked-nMf.1.1.scaf07171-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf07171-processed-gene-0.2
N
0.813
snap_masked-nMf.1.1.scaf15898-processed-gene-0.2
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf15898-processed-gene-0.2
N
0.989