CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SMTD_0002095401 *(Schistosoma mattheei)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00105 (zf-C4)	IPR001628	SMTD_0002095401	T310396_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NR5A1 M05613_2.00	Homo sapiens	NNCAAGGYCRN	NYGRCCTTGNN	SELEX Yin et al.(2017) NR5A1_FL_HT-SELEX	0.951	0.729
Nr5a1 M09322_2.00	Mus musculus	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) STF1_MOUSE.H11MO.0.B	0.951	0.729
NR5A1 M11142_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q5_01	0.951	0.729
NR5A1 M11143_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q5	0.951	0.729
NR5A1 M11144_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q6_01	0.951	0.729
NR5A1 M11145_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SF1_Q6	0.951	0.729
NR5A1 M05614_2.00	Homo sapiens	NNSAAGGHCRN	NYGDCCTTSNN	SELEX Yin et al.(2017) NR5A1_FL_Methyl-HT-SELEX	0.951	0.729
NR5A2 M05589_2.00	Homo sapiens	YCAAGGYCRYGRCCTTSR	YSAAGGYCRYGRCCTTGR	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_1	0.948	0.729
NR5A2 M05590_2.00	Homo sapiens	NYCAAGGTCAH	DTGACCTTGRN	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_2	0.948	0.729
NR5A2 M05591_2.00	Homo sapiens	YGRCCTTSVNYSAAGGYCR	YGRCCTTSRNBSAAGGYCR	SELEX Yin et al.(2017) NR5A2_eDBD_HT-SELEX_3	0.948	0.729
NR5A2 M09271_2.00	Homo sapiens	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) NR5A2_HUMAN.H11MO.0.B	0.948	0.729
NR5A2 M11126_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q5_01	0.948	0.729
NR5A2 M11127_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q5	0.948	0.729
NR5A2 M11128_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$LRH1_Q6	0.948	0.729
NR5A2 M05592_2.00	Homo sapiens	YCAAGGYCRYGACCTTSR	YSAAGGTCRYGRCCTTGR	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_1	0.948	0.729
NR5A2 M05593_2.00	Homo sapiens	NYCAAGGTCRH	DYGACCTTGRN	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_2	0.948	0.729
NR5A2 M05594_2.00	Homo sapiens	YGRCCTTSVNBSAAGGYCR	YGRCCTTSVNBSAAGGYCR	SELEX Yin et al.(2017) NR5A2_eDBD_Methyl-HT-SELEX_3	0.948	0.729
Nr5a2 M00816_2.00	Mus musculus	VAAGGTCR	YGACCTTB	PBM Weirauch et al.(2013) pTH3468	0.940	0.700
Nr5a2 M08158_2.00	Mus musculus	VRDBTCAAGGYCANN	NNTGRCCTTGAVHYB	ChIP-seq Mathelier et al.(2014) MA0505.1	0.940	0.700
Nr5a2 M09320_2.00	Mus musculus	NBYCAAGGYCA	TGRCCTTGRVN	Misc Kulakovskiy et al.(2013) NR5A2_MOUSE.H11MO.0.A	0.940	0.700
Nr5a2 M09616_2.00	Mus musculus	BYCAAGGYCA	TGRCCTTGRV	Misc Heinz et al.(2010) Pancreas-LRH1_GSE34295	0.940	0.700
Nr5a2 M09615_2.00	Mus musculus	BYCAAGGYCA	TGRCCTTGRV	Misc Heinz et al.(2010) mES-Nr5a2_GSE19019	0.940	0.700
nhr-25 M08226_2.00	Caenorhabditis elegans	MAAGGTCA	TGACCTTK	ChIP-seq Contrino et al.(2012) Mw160	0.939	0.743
ftz-f1 M02407_2.00	Drosophila melanogaster	RRGGTCAH	DTGACCYY	PBM Weirauch et al.(2014) pTH5709	0.924	0.714
ftz-f1 M06417_2.00	Drosophila melanogaster	MMRKYYSAAGGWCRCYGM	KCRGYGWCCTTSRRMYKK	B1H Zhu et al.(2011) ftz-f1_FlyReg_FBgn0001078	0.924	0.714
ftz-f1 M06418_2.00	Drosophila melanogaster	AAGGTCA	TGACCTT	B1H Zhu et al.(2011) ftz-f1_SANGER_5_FBgn0001078	0.924	0.714
Hr39 M03942_2.00	Drosophila melanogaster	CAAGGHCRN	NYGDCCTTG	SELEX Nitta et al.(2015) Hr39_1	0.907	0.614
Hr39 M03943_2.00	Drosophila melanogaster	CAAGGYCRH	DYGRCCTTG	SELEX Nitta et al.(2015) Hr39_2	0.907	0.614
Nr2f6 M00811_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Weirauch et al.(2013) pTH2193	0.766	0.500
Nr2f6 M03419_2.00	Mus musculus	RAGGTCAADAGGTCA	TGACCTHTTGACCTY	SELEX Jolma et al.(2013) Nr2f6_1	0.766	0.500
Nr2f6 M03420_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Nr2f6_2	0.766	0.500
usp M03934_2.00	Drosophila melanogaster	ARRGGTCAAAGGTCA	TGACCTTTGACCYYT	SELEX Nitta et al.(2015) usp_1	0.764	0.543
usp M06426_2.00	Drosophila melanogaster	HRRGGTCAH	DTGACCYYD	B1H Zhu et al.(2011) usp_SANGER_5_FBgn0003964	0.764	0.543
usp M02709_2.00	Drosophila melanogaster	GGGGTCACSN	NSGTGACCCC	SELEX Mathelier et al.(2014) MA0016.1	0.764	0.543
usp M09689_2.00	Drosophila melanogaster	KRGGTCACG	CGTGACCYM	Misc Kulakovskiy et al.(2009) usp	0.764	0.543
usp M11191_2.00	Drosophila melanogaster	GRGGTCAYS	SRTGACCYC	Transfac Matys et al.(2006) I$CF1_01	0.764	0.543
usp M11192_2.00	Drosophila melanogaster	GGGGTCAYS	SRTGACCCC	Transfac Matys et al.(2006) I$CF1_02	0.764	0.543
Rorb M00820_2.00	Mus musculus	NRGGTCANN	NNTGACCYN	PBM Weirauch et al.(2013) pTH3469	0.746	0.571
rorb M02404_2.00	Tetraodon nigroviridis	NGAGGTCANN	NNTGACCTCN	PBM Weirauch et al.(2014) pTH6589	0.746	0.571
RORB M05677_2.00	Homo sapiens	DAWNTRGGTYAGTRGGTCAN	NTGACCYACTRACCYANWTH	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_1	0.746	0.571
RORB M05678_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_HT-SELEX_2	0.746	0.571
RORB M05883_2.00	Homo sapiens	AWNBRGGTCAN	NTGACCYVNWT	SMiLE-seq Isakova et al.(2017) RORb	0.746	0.571
RORB M11187_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RORBETA_Q2	0.746	0.571
RORB M05679_2.00	Homo sapiens	DAWBTRGGTYAGTRGGTCRN	NYGACCYACTRACCYAVWTH	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_1	0.746	0.571
RORB M05680_2.00	Homo sapiens	NAWNKRGGTCAYGACCYMNWTN	NAWNKRGGTCRTGACCYMNWTN	SELEX Yin et al.(2017) RORB_eDBD_Methyl-HT-SELEX_2	0.746	0.571
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SMTD_0002095401-mRNA-1	Nuclear receptor	77	146	ENCPICGDKVSGYHYGLPTCESCKGFFKRTVQNKKEYHCNEQGNCVVDRLHRKRCASCRFQKCLIVGMRV

Links
Other Nuclear receptor family TFs
Other *Schistosoma mattheei* TFs

588 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
FFUJ_00047	Fusarium fujikuroi	FFUJ_00047	N
FGRRES_00069	Fusarium graminearum	FGRRES_00069	N
FPSE_12029	Fusarium pseudograminearum	FPSE_12029	N
gw1.40.62.1	Nectria haematococca	gw1.40.62.1	N
NechaG13130	Fusarium solani	NechaG13130	N
TRIATDRAFT_22871	Trichoderma atroviride	TRIATDRAFT_22871	N
TRIREDRAFT_55105	Trichoderma reesei	TRIREDRAFT_55105	N
TRIVIDRAFT_164135	Trichoderma virens	TRIVIDRAFT_164135	N
VHEMI10005	Torrubiella hemipterigena	VHEMI10005	N

SMTD_0002095401 (Schistosoma mattheei) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

588 Related TFs

SMTD_0002095401 **(Schistosoma mattheei)
Nuclear receptor**