ENSPFOG00000017550 (Poecilia formosa)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSPFOG00000017550 T311777_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.992 0.992
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.984 0.984
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.984 0.984
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.984 0.984
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.944 0.944
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.944 0.944
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.944 0.944
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.944 0.944
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.872 0.872
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.872 0.872
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.872 0.872
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.744 0.744
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.736 0.736
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.728 0.728
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.728 0.728
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.728 0.728
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.728 0.728
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.728 0.728
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.728 0.728
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.728 0.728
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.728 0.728
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.728 0.728
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.728 0.728
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.728 0.728
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.728 0.728
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.728 0.728
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.728 0.728
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.728 0.728
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.728 0.728
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.728 0.728
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.728 0.728
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.712 0.712
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.712 0.712
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.712 0.712
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.712 0.712
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.712 0.712
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.704 0.704
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.704 0.704
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000017633 Paired box 4 128
ENSPFOP00000026843 Paired box 4 128

Links

Other Paired box family TFs
Other Poecilia formosa TFs

515 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I 0.000
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I 0.000
BGIOSGA034853 Oryza indica BGIOSGA034853 N 0.000
BGIOSGA037037 Oryza indica BGIOSGA037037 I 0.000
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I 0.000
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I 0.000
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I 0.000
Cla014037 Citrullus lanatus Cla014037 I 0.000
Cla015261 Citrullus lanatus Cla015261 I 0.000
Cucsa.363640 Cucumis sativus Cucsa.363640 I 0.000
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I 0.000
F775_08606 Aegilops tauschii F775_08606 I 0.000
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I 0.000
GRMZM2G079365 Zea mays GRMZM2G079365 I 0.000
GRMZM2G136266 Zea mays GRMZM2G136266 I 0.000
GRMZM2G146020 Zea mays GRMZM2G146020 I 0.000
GRMZM5G821024 Zea mays GRMZM5G821024 I 0.000
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I 0.000
GSMUA_Achr6G13040_001 Musa acuminata GSMUA_Achr6G13040_001 I 0.000
GSMUA_Achr6G18130_001 Musa acuminata GSMUA_Achr6G18130_001 I 0.000
LPERR11G03390 Leersia perrieri LPERR11G03390 I 0.000
LPERR12G03530 Leersia perrieri LPERR12G03530 I 0.000
Lus10029773.g Linum usitatissimum Lus10029773.g I 0.000
Lus10042802.g Linum usitatissimum Lus10042802.g I 0.000
mgf003343m Mimulus guttatus mgf003343m I 0.000
MLOC_71198 Hordeum vulgare MLOC_71198 I 0.000
OB11G13300 Oryza brachyantha OB11G13300 I 0.000
OB12G13750 Oryza brachyantha OB12G13750 I 0.000
OBART11G03920 Oryza barthii OBART11G03920 I 0.000
OBART12G03760 Oryza barthii OBART12G03760 I 0.000
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N 0.000
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I 0.000
OLONG_001598 Oryza longistaminata OLONG_001598 I 0.000
OMERI11G03570 Oryza meridionalis OMERI11G03570 N 0.000
OMERI12G02030 Oryza meridionalis OMERI12G02030 I 0.000
ONIVA11G04030 Oryza nivara ONIVA11G04030 I 0.000
ONIVA12G03450 Oryza nivara ONIVA12G03450 I 0.000
OPUNC11G03640 Oryza punctata OPUNC11G03640 N 0.000
OPUNC12G03640 Oryza punctata OPUNC12G03640 N 0.000
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I 0.000
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I 0.000
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I 0.000
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I 0.000
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I 0.000
OS11G0160500 Oryza sativa OS11G0160500 N 0.000
OS12G0162500 Oryza sativa OS12G0162500 I 0.000
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I 0.000
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N 0.000
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I 0.000
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I 0.000
PK27109.1 Cannabis sativa PK27109.1 D 0.000
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I 0.000
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I 0.000
SapurV1A.0256s0010 Salix purpurea SapurV1A.0256s0010 I 0.000
SapurV1A.1302s0050 Salix purpurea SapurV1A.1302s0050 I 0.000
Sb05g003810 Sorghum bicolor Sb05g003810 I 0.000
Sb08g003940 Sorghum bicolor Sb08g003940 I 0.000
Si010549m.g Setaria italica Si010549m.g I 0.000
Si026605m.g Setaria italica Si026605m.g I 0.000
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I 0.000
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I 0.000
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I 0.000
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I 0.000
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N 0.000
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I 0.000
TRIUR3_12877 Triticum urartu TRIUR3_12877 I 0.000
TRIUR3_31416 Triticum urartu TRIUR3_31416 I 0.000
VIP1 Vitis vinifera VIT_18s0076g00330 I 0.000