Phyra78816 (Phytophthora ramorum)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 Phyra78816 T314000_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra78816
M02437_2.00		 Phytophthora ramorum
NNYRNWACAN
NTGTWNYRNN		 PBM
Weirauch et al.(2014)
pTH7817		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02437_2.00 Pipsqueak 52 91

DNA Binding Domains

Protein ID Domain From To Sequence
Phyra78816 Pipsqueak 310 349

Links

Other Pipsqueak family TFs
Other Phytophthora ramorum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bm699 Brugia malayi Bm699 N
nOo.2.0.1.g00887 Onchocerca ochengi nOo.2.0.1.g00887 N
OFLC_0000304101 Onchocerca flexuosa OFLC_0000304101 N
WBGene00241807 Onchocerca volvulus WBGene00241807 N
WUBG_10656 Wuchereria bancrofti WUBG_10656 N