Cflo_03909--XP_394016.2_APIME (Camponotus floridanus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Cflo_03909--XP_394016.2_APIME T319649_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.831 0.831
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.831 0.831
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.831 0.831
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.831 0.831
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.792 0.792
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.792 0.792
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.792 0.792
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.792 0.792
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.792 0.792
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.792 0.792
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.792 0.792
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.792 0.792
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.792 0.792
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.792 0.792
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.792 0.792
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.792 0.792
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.785 0.785
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.785 0.785
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.785 0.785
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.785 0.785
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.785 0.785
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.785 0.785
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.785 0.785
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.785 0.785
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.785 0.785
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.785 0.785
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.785 0.785
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.785 0.785
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.762 0.762
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.762 0.762
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.762 0.762
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.762 0.762
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.762 0.762
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.762 0.762
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.762 0.762
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.762 0.762
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.762 0.762
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.762 0.762
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.762 0.762
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.762 0.762
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR

YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cflo_03909--XP_394016.2_APIME Runt 71 200

Links

Other Runt family TFs
Other Camponotus floridanus TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL006160 Aedes aegypti AAEL006160 I 0.831
AAEL007040 Aedes aegypti AAEL007040 I 0.838
AALB007753 Anopheles albimanus AALB007753 I 0.819
Aan_R007315 Calypte anna Aan_R007315 I 0.811
AARA011332 Anopheles arabiensis AARA011332 I 0.794
AATE002063 Anopheles atroparvus AATE002063 I 0.831
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.831
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.811
Alligator_sinensis_CCG001676.1 Alligator sinensis Alligator_sinensis_CCG001676.1 I 0.791
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.811
ASIS002518 Anopheles sinensis ASIS002518 I 0.819
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.831
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.802
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.811
CapteG142159 Capitella teleta CapteG142159 I 0.769
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.885
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.785
Cmyd_10020845 Chelonia mydas Cmyd_10020845 I 0.769
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.792
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.821
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.821
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.792
ENSAMEG00000010102 Ailuropoda melanoleuca ENSAMEG00000010102 I 0.762
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.792
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.785
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.769
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.777
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.802
ENSAPLG00000016439 Anas platyrhynchos ENSAPLG00000016439 I 0.769
ENSCPOG00000000551 Cavia porcellus ENSCPOG00000000551 I 0.762
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.800
ENSCSAG00000000947 Chlorocebus sabaeus ENSCSAG00000000947 I 0.762
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.792
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.785
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.792
ENSFALG00000000470 Ficedula albicollis ENSFALG00000000470 I 0.769
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.815
ENSGALG00000026821 Gallus gallus ENSGALG00000026821 I 0.769
ENSGMOG00000010468 Gadus morhua ENSGMOG00000010468 I 0.762
ENSGMOG00000019132 Gadus morhua ENSGMOG00000019132 I 0.785
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.785
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.777
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.785
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.785
ENSMEUG00000014419 Macropus eugenii ENSMEUG00000014419 I 0.762
ENSMODG00000013941 Monodelphis domestica ENSMODG00000013941 I 0.769
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.792
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.792
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.813
ENSOARG00000006421 Ovis aries ENSOARG00000006421 I 0.754
ENSONIG00000001025 Oreochromis niloticus ENSONIG00000001025 I 0.762
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.785
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.769
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.785
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.785
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.792
ENSPANG00000008140 Papio anubis ENSPANG00000008140 I 0.762
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.785
ENSPFOG00000016115 Poecilia formosa ENSPFOG00000016115 I 0.762
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.762
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.792
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.785
ENSPSIG00000012728 Pelodiscus sinensis ENSPSIG00000012728 I 0.769
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.793
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.792
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.785
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.792
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.724
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.842
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.785
ENSSTOG00000022471 Ictidomys tridecemlineatus ENSSTOG00000022471 I 0.762
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.792
ENSXMAG00000003400 Xiphophorus maculatus ENSXMAG00000003400 I 0.762
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.785
estExt_fgenesh2_kg.C_3770001 Branchiostoma floridae estExt_fgenesh2_kg.C_3770001 I 0.769
estExt_fgenesh2_kg.C_750001 Branchiostoma floridae estExt_fgenesh2_kg.C_750001 I 0.769
GA25684 Drosophila pseudoobscura FBgn0247061 I 0.792
GB52761 Apis mellifera GB52761 I 0.892
GE15340 Drosophila yakuba FBgn0232921 I 0.792
GF15983 Drosophila ananassae FBgn0093006 I 0.792
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.787
GG17578 Drosophila erecta FBgn0109803 I 0.792
GH17774 Drosophila grimshawi FBgn0125244 I 0.792
GI15119 Drosophila mojavensis FBgn0137869 I 0.792
GJ18917 Drosophila virilis FBgn0206063 I 0.792
GK20052 Drosophila willistoni FBgn0222049 I 0.792
GL15927 Drosophila persimilis FBgn0153531 I 0.792
GM22662 Drosophila sechellia FBgn0177532 I 0.792
HMEL009843 Heliconius melpomene HMEL009843 I 0.842
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 1.000
Hsal_12322--XP_394014.2_APIME Harpegnathos saltator Hsal_12322--XP_394014.2_APIME I 0.885
KGM_21075 Danaus plexippus KGM_21075 I 0.854
LotgiG96224 Lottia gigantea LotgiG96224 I 0.754
MCINX000302 Melitaea cinxia MCINX000302 I 0.785
MDOA011942 Musca domestica MDOA011942 I 0.800
MDOA013149 Musca domestica MDOA013149 I 0.769
MESCA007079 Megaselia scalaris MESCA007079 I 0.844
Myotis_brandtii_RUNX2_10026084 Myotis brandtii Myotis_brandtii_RUNX2_10026084 I 0.777
NEMVEDRAFT_v1g129231 Nematostella vectensis NEMVEDRAFT_v1g129231 I 0.762
NV10998 Nasonia vitripennis NV10998 I 0.838
NV11000 Nasonia vitripennis NV11000 I 0.877
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.792
PHUM333320 Pediculus humanus PHUM333320 I 0.838
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.785
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.792
Pvit_17193 Pogona vitticeps Pvit_17193 I 0.769
RPRC000026 Rhodnius prolixus RPRC000026 I 0.830
RPRC005391 Rhodnius prolixus RPRC005391 I 0.877
RUNX1 Bos taurus ENSBTAG00000004742 I 0.785
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.792
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.800
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.792
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.792
RUNX1 Equus caballus ENSECAG00000003462 I 0.792
RUNX1 Homo sapiens ENSG00000159216 D 0.792
RUNX1 Gallus gallus ENSGALG00000016022 I 0.792
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.792
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.792
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.792
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.808
Runx1 Mus musculus ENSMUSG00000022952 D 0.792
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.792
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.792
RUNX1 Procavia capensis ENSPCAG00000016747 I 0.785
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.792
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.792
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.811
runx1.L Xenopus laevis XB-GENE-864949 I 0.785
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.785
RUNX2 Bos taurus ENSBTAG00000004104 I 0.785
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.785
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.785
RUNX2 Equus caballus ENSECAG00000020875 I 0.772
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.785
RUNX2 Homo sapiens ENSG00000124813 D 0.785
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.785
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.802
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.785
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.785
Runx2 Mus musculus ENSMUSG00000039153 D 0.785
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.785
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.785
runx2 Oryzias latipes ENSORLG00000010169 I 0.762
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.785
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.785
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.785
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.762
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.785
runx2.L Xenopus laevis XB-GENE-864817 I 0.769
runx2a Danio rerio ENSDARG00000040261 I 0.777
runx2b Danio rerio ENSDARG00000059233 I 0.777
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.762
runx2b Tetraodon nigroviridis ENSTNIG00000009685 I 0.762
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.772
RUNX3 Canis familiaris ENSCAFG00000012903 I 0.762
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.762
runx3 Danio rerio ENSDARG00000052826 I 0.785
RUNX3 Dasypus novemcinctus ENSDNOG00000043493 I 0.769
RUNX3 Felis catus ENSFCAG00000000680 I 0.762
RUNX3 Homo sapiens ENSG00000020633 D 0.762
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.785
RUNX3 Gorilla gorilla ENSGGOG00000004848 I 0.762
RUNX3 Loxodonta africana ENSLAFG00000008382 I 0.769
RUNX3 Macaca mulatta ENSMMUG00000002420 I 0.762
Runx3 Mus musculus ENSMUSG00000070691 D 0.762
RUNX3 Oryctolagus cuniculus ENSOCUG00000017751 I 0.762
RUNX3 Otolemur garnettii ENSOGAG00000025633 I 0.762
RUNX3 Ochotona princeps ENSOPRG00000011273 I 0.762
runx3 Oryzias latipes ENSORLG00000017515 I 0.785
RUNX3 Pan troglodytes ENSPTRG00000000351 I 0.762
Runx3 Rattus norvegicus ENSRNOG00000054217 I 0.762
RUNX3 Taeniopygia guttata ENSTGUG00000001130 I 0.769
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.783
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.777
RUNX3 Tursiops truncatus ENSTTRG00000009396 I 0.762
runx3 Xenopus tropicalis XB-GENE-487784 I 0.769
runx3.L Xenopus laevis XB-GENE-6487158 I 0.754
RunxA Drosophila melanogaster FBgn0083981 I 0.792
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.785
SINV13317 Solenopsis invicta SINV13317 I 1.000
SINV13363 Solenopsis invicta SINV13363 I 0.885
SPU_006917 Strongylocentrotus purpuratus SPU_006917 I 0.715
Tal_R011874 Tyto alba Tal_R011874 I 0.802
TC005566 Tribolium castaneum TC005566 I 0.823
TC006536 Tribolium castaneum TC006536 I 0.823
TC006542 Tribolium castaneum TC006542 I 0.746
TriadG25179 Trichoplax adhaerens TriadG25179 I 0.746
XP_002939386 Xenopus tropicalis XP_002939386 I 0.785
XP_002939387 Xenopus tropicalis XP_002939387 I 0.785
XP_002939388 Xenopus tropicalis XP_002939388 I 0.785