POPTR_0009s16790 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0009s16790 T320747_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.878 0.878
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s16790.1 RWP-RK 587 635

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.000
Bo3g040110 Brassica oleracea Bo3g040110 N 0.000
Bostr.27991s0069 Boechera stricta Bostr.27991s0069 N 0.000
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.000
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.000
Cla013460 Citrullus lanatus Cla013460 N 0.000
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.000
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.000
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.000
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.000
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.000
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.000
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.000
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.000
OGLUM05G01570 Oryza glumaepatula OGLUM05G01570 N 0.000
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.000
OMERI05G01620 Oryza meridionalis OMERI05G01620 N 0.000
ONIVA05G01600 Oryza nivara ONIVA05G01600 N 0.000
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.000
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.000
ORUFI05G01620 Oryza rufipogon ORUFI05G01620 N 0.000
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.000
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.000
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.000
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.000
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.000
RAP2.7 Arabidopsis lyrata fgenesh2_kg.4__825__AT2G28550.1 N 0.000
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.000
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.000
Sb09g002080 Sorghum bicolor Sb09g002080 N 0.000
Solyc09g007260.2 Solanum lycopersicum Solyc09g007260.2 N 0.000
TCM_022077 Theobroma cacao TCM_022077 I 0.000
TCM_042000 Theobroma cacao TCM_042000 I 0.000
TCM_043051 Theobroma cacao TCM_043051 N 0.000
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.000