Cagra.1383s0021 (Capsella grandiflora)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Cagra.1383s0021 T321077_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.898 0.898
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.796 0.796
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1383s0021.1.p RWP-RK 416 464

Links

Other RWP-RK family TFs
Other Capsella grandiflora TFs

407 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001677501 Anisakis simplex ASIM_0001677501 N 0.000
ASU_12719 Ascaris suum ASU_12719 N 0.000
Bm3899 Brugia malayi Bm3899 N 0.000
BXY_0574800 Bursaphelenchus xylophilus BXY_0574800 N 0.000
CRE29609 Caenorhabditis remanei CRE29609 N 0.000
DICVIV_00304 Dictyocaulus viviparus DICVIV_00304 N 0.000
EVEC_0000982901 Enterobius vermicularis EVEC_0000982901 N 0.000
HCOI01584000 Haemonchus contortus HCOI01584000 N 0.000
HPLM_0000720101 Haemonchus placei HPLM_0000720101 N 0.000
L596_g21063 Steinernema carpocapsae L596_g21063 N 0.000
L898_g4344 Steinernema monticolum L898_g4344 N 0.000
LOAG_18157 Loa loa LOAG_18157 N 0.000
MhA1_Contig659.frz3.gene12 Meloidogyne hapla MhA1_Contig659.frz3.gene12 N 0.000
Minc00757 Meloidogyne incognita Minc00757 N 0.000
Minc01466 Meloidogyne incognita Minc01466 N 0.000
nAv.1.0.1.g02876 Acanthocheilonema viteae nAv.1.0.1.g02876 N 0.000
nDi.2.2.2.g08539 Dirofilaria immitis nDi.2.2.2.g08539 N 0.000
NECAME_05919 Necator americanus NECAME_05919 N 0.000
nLs.2.1.2.g02844 Litomosoides sigmodontis nLs.2.1.2.g02844 N 0.000
nOo.2.0.1.g06284 Onchocerca ochengi nOo.2.0.1.g06284 N 0.000
PEQ_0000361701 Parascaris equorum PEQ_0000361701 N 0.000
RSKR_0000114000 Rhabditophanes kr3021 RSKR_0000114000 N 0.000
TCLT_0000822701 Thelazia callipaeda TCLT_0000822701 N 0.000
TCNE_0001786701 Toxocara canis TCNE_0001786701 N 0.000
TELCIR_17986 Teladorsagia circumcincta TELCIR_17986 N 0.000
WUBG_00492 Wuchereria bancrofti WUBG_00492 N 0.000