ENSAMXG00000015681 (Astyanax mexicanus)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSAMXG00000015681 T321617_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.971 0.827
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.971 0.827
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.971 0.827
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.971 0.827
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.971 0.813
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.971 0.813
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.971 0.813
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.967 0.787
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.967 0.773
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.956 0.720
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.952 0.693
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.952 0.693
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.952 0.693
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.952 0.693
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.952 0.693
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.952 0.693
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.952 0.693
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.950 0.693
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.904 0.600
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000016135 SAND 71 146

Links

Other SAND family TFs
Other Astyanax mexicanus TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003158 Ricinus communis 29983.m003158 I 0.000
30170.m014245 Ricinus communis 30170.m014245 I 0.000
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.000
Bo3g027460 Brassica oleracea Bo3g027460 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Bra022954 Brassica rapa Bra022954 I 0.000
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.000
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.000
Ca_16243 Cicer arietinum Ca_16243 I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
Cla002263 Citrullus lanatus Cla002263 I 0.000
Cla009788 Citrullus lanatus Cla009788 I 0.000
Cla023735 Citrullus lanatus Cla023735 I 0.000
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.000
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.000
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.000
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.000
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.000
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.000
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.000
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
MDP0000156994 Malus domestica MDP0000156994 I 0.000
MDP0000158607 Malus domestica MDP0000158607 I 0.000
MDP0000861601 Malus domestica MDP0000861601 I 0.000
mgf001202m Mimulus guttatus mgf001202m I 0.000
mgf001295m Mimulus guttatus mgf001295m I 0.000
mgf016414m Mimulus guttatus mgf016414m I 0.000
mgf017351m Mimulus guttatus mgf017351m I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.000
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
Pavir.Ba01146 Panicum virgatum Pavir.Ba01146 N 0.000
Pavir.Bb02759 Panicum virgatum Pavir.Bb02759 N 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.000
PK25661.1 Cannabis sativa PK25661.1 I 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
Pm011381 Prunus mume Pm011381 I 0.000
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.000
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.000
SPL3 Arabidopsis thaliana AT2G33810 D 0.000
TCM_029832 Theobroma cacao TCM_029832 I 0.000
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.000
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.000