MTR_2g078770 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_2g078770 T322733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.931 0.747
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.929 0.733
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.928 0.773
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.921 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.921 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.921 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.919 0.693
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.916 0.747
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.914 0.747
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.914 0.747
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.914 0.747
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.911 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.901 0.733
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.897 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.897 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.897 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH38697 SBP 58 132

Links

Other SBP family TFs
Other Medicago truncatula TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG002099.1 Alligator sinensis Alligator_sinensis_CCG002099.1 N
ENSCSAG00000013779 Chlorocebus sabaeus ENSCSAG00000013779 N
ENSFALG00000004762 Ficedula albicollis ENSFALG00000004762 N
ENSLACG00000018073 Latimeria chalumnae ENSLACG00000018073 N
ENSMEUG00000015853 Macropus eugenii ENSMEUG00000015853 N
ENSMMUG00000022002 Macaca mulatta ENSMMUG00000022002 N
ENSMPUG00000012881 Mustela putorius furo ENSMPUG00000012881 N
ENSNLEG00000017189 Nomascus leucogenys ENSNLEG00000017189 N
ENSPANG00000024465 Papio anubis ENSPANG00000024465 N
ENSPPYG00000007793 Pongo abelii ENSPPYG00000007793 N
ENSPSIG00000013671 Pelodiscus sinensis ENSPSIG00000013671 N
ENSSHAG00000011609 Sarcophilus harrisii ENSSHAG00000011609 N
ENSSTOG00000011842 Ictidomys tridecemlineatus ENSSTOG00000011842 N
Ogr16274 Ophisaurus gracilis Ogr16274 N
Pvit_02550 Pogona vitticeps Pvit_02550 N
SGSM2 Sus scrofa ENSSSCG00000017829 N
sgsm2 Xenopus tropicalis XB-GENE-6050632 N
SGSM2 Taeniopygia guttata ENSTGUG00000008737 N
SGSM2 Pteropus vampyrus ENSPVAG00000002165 N
SGSM2 Anolis carolinensis ENSACAG00000011801 N
SGSM2 Pan troglodytes ENSPTRG00000008548 N
SGSM2 Ornithorhynchus anatinus ENSOANG00000008634 N
Sgsm2 Mus musculus ENSMUSG00000038351 N
SGSM2 Monodelphis domestica ENSMODG00000010704 N
SGSM2 Meleagris gallopavo ENSMGAG00000008568 N
SGSM2 Loxodonta africana ENSLAFG00000014571 N
SGSM2 Gorilla gorilla ENSGGOG00000002449 N
SGSM2 Gallus gallus ENSGALG00000005737 N
SGSM2 Homo sapiens ENSG00000141258 N
SGSM2 Callithrix jacchus ENSCJAG00000012412 N