orange1.1g001971m.g (Citrus sinensis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 orange1.1g001971m.g T323594_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.984 0.947
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.975 0.853
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.974 0.853
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.974 0.853
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.974 0.853
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.970 0.827
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.970 0.827
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.970 0.827
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.969 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.967 0.773
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.966 0.813
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.959 0.813
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.948 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.945 0.720
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.938 0.707
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.938 0.707
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.938 0.707
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.936 0.693
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.936 0.693
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.936 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g001971m SBP 150 224
orange1.1g002122m SBP 150 224
orange1.1g003063m SBP 150 224
orange1.1g004091m SBP 150 224
orange1.1g004246m SBP 150 224
orange1.1g006174m SBP 150 224
orange1.1g007712m SBP 150 224
orange1.1g007870m SBP 150 224
orange1.1g007883m SBP 150 224
orange1.1g008080m SBP 150 224

Links

Other SBP family TFs
Other Citrus sinensis TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007260 Calypte anna Aan_R007260 I
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Bos taurus ENSBTAG00000009780 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Callithrix jacchus ENSCJAG00000016182 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
GTF2I Equus caballus ENSECAG00000020289 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
GTF2I Sus scrofa ENSSSCG00000007721 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
GTF2I Gallus gallus ENSGALG00000021665 I
Gtf2i Mus musculus ENSMUSG00000060261 I
GTF2I Homo sapiens ENSG00000263001 D
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
GTF2I Felis catus ENSFCAG00000002617 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
Tal_R004165 Tyto alba Tal_R004165 I
XP_002932326 Xenopus tropicalis XP_002932326 I