NFIA (Pteropus vampyrus)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSPVAG00000005805 T324920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		1.000 1.000
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		1.000 1.000
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		1.000 1.000
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		1.000 1.000
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		1.000 1.000
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		1.000 1.000
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.934 0.934
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.934 0.934
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.934 0.934
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.934 0.934
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.934 0.934
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.934 0.934
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.934 0.934
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.934 0.934
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.934 0.934
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.934 0.934
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.934 0.934
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.934 0.934
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.868 0.868
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.857 0.857
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.857 0.857
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.857 0.857
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.857 0.857
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.857 0.857
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.857 0.857
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.857 0.857
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.857 0.857
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000005489 SMAD 91 195

Links

Other SMAD family TFs
Other Pteropus vampyrus TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA011514 Oryza indica BGIOSGA011514 N
BGIOSGA020507 Oryza indica BGIOSGA020507 N
BRADI1G29857 Brachypodium distachyon BRADI1G29857 N
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N
F775_22440 Aegilops tauschii F775_22440 N
F775_22671 Aegilops tauschii F775_22671 N
GRMZM2G059428 Zea mays GRMZM2G059428 N
GRMZM2G074358 Zea mays GRMZM2G074358 N
GRMZM2G126817 Zea mays GRMZM2G126817 N
GRMZM2G389557 Zea mays GRMZM2G389557 N
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N
GSMUA_Achr7G04030_001 Musa acuminata GSMUA_Achr7G04030_001 N
LPERR03G02450 Leersia perrieri LPERR03G02450 N
LPERR06G23420 Leersia perrieri LPERR06G23420 N
MLOC_15184 Hordeum vulgare MLOC_15184 N
MLOC_65456 Hordeum vulgare MLOC_65456 N
OB03G12640 Oryza brachyantha OB03G12640 N
OBART03G02620 Oryza barthii OBART03G02620 N
OBART03G02630 Oryza barthii OBART03G02630 N
OBART06G27980 Oryza barthii OBART06G27980 N
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N
OLONG_016677 Oryza longistaminata OLONG_016677 N
OMERI03G02480 Oryza meridionalis OMERI03G02480 N
OMERI06G27920 Oryza meridionalis OMERI06G27920 N
ONIVA03G02250 Oryza nivara ONIVA03G02250 N
ONIVA06G30950 Oryza nivara ONIVA06G30950 N
OPUNC03G02420 Oryza punctata OPUNC03G02420 N
OPUNC06G25510 Oryza punctata OPUNC06G25510 N
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N
OS03G0133000 Oryza sativa OS03G0133000 N
OS06G0726300 Oryza sativa OS06G0726300 N
Pavir.Db00028 Panicum virgatum Pavir.Db00028 N
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N
Pavir.J01198 Panicum virgatum Pavir.J01198 N
Pavir.J24394 Panicum virgatum Pavir.J24394 N
Sb01g048130 Sorghum bicolor Sb01g048130 N
Sb10g030770 Sorghum bicolor Sb10g030770 N
Si006994m.g Setaria italica Si006994m.g N
Si036757m.g Setaria italica Si036757m.g N
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N
TRIUR3_18560 Triticum urartu TRIUR3_18560 N
TRIUR3_32216 Triticum urartu TRIUR3_32216 N
TRIUR3_33949 Triticum urartu TRIUR3_33949 N