AACERI_AaceriAGL073CA (Saccharomycetaceae sp ashbya aceri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AACERI_AaceriAGL073CA T326244_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IXR1
M08429_2.00 		Saccharomyces cerevisiae
CMCCGCTYCCGGYTT
AARCCGGRAGCGGKG		 ChIP-chip
Mathelier et al.(2014)
MA0323.1 		0.639 0.735
IXR1
M11345_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$IXR1_01 		0.639 0.735
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AGO13797 Sox 209 277
AGO13797 Sox 282 348

Links

Other Sox family TFs
Other Saccharomycetaceae sp ashbya aceri TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N
cassava43227.valid.m1 Manihot esculenta cassava43227.valid.m1 N
gene27615-v1.0-hybrid Fragaria vesca gene27615-v1.0-hybrid N
LjSGA_024981.1 Lotus japonicus LjSGA_024981.1 N
Pm022530 Prunus mume Pm022530 N
PRUPE_ppa006028mg Prunus persica PRUPE_ppa006028mg N
PRUPE_ppa007941mg Prunus persica PRUPE_ppa007941mg N