CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene27615-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene27615-v1.0-hybrid
T298002_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna27615.1-v1.0-hybrid
NAC/NAM
7
133
PPGFRFNPTDVELVQYYLKRKIMGKKLHVKVVAEVDIYKWAPWDLPDKSCWRSGDLKWYFFCPREKKYASGGRVNRATDCGYWKTTGKDRSVLYNSEVVGWIKTLIFHGGRAPRGERTNWVLHEYRL
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa007941mg
Prunus persica
PRUPE_ppa007941mg
N
0.926
Pm022531
Prunus mume
Pm022531
N
0.923
PRUPE_ppa006028mg
Prunus persica
PRUPE_ppa006028mg
N
0.914
gene27614-v1.0-hybrid
Fragaria vesca
gene27614-v1.0-hybrid
N
0.914
cassava2513.valid.m1
Manihot esculenta
cassava2513.valid.m1
I
0.903
cassava2514.valid.m1
Manihot esculenta
cassava2514.valid.m1
I
0.903
cassava2515.valid.m1
Manihot esculenta
cassava2515.valid.m1
I
0.903
cassava43226.valid.m1
Manihot esculenta
cassava43226.valid.m1
N
0.903
cassava43227.valid.m1
Manihot esculenta
cassava43227.valid.m1
N
0.903
Thhalv10004501m.g
Eutrema salsugineum
Thhalv10004501m.g
I
0.899
LjSGA_024981.1
Lotus japonicus
LjSGA_024981.1
N
0.896
Bo3g101690
Brassica oleracea
Bo3g101690
I
0.895
Bra024263
Brassica rapa
Bra024263
I
0.895
Ciclev10001200m.g
Citrus clementina
Ciclev10001200m.g
N
0.892
orange1.1g036240m.g
Citrus sinensis
orange1.1g036240m.g
N
0.892
POPTR_0005s06040
Populus trichocarpa
POPTR_0005s06040
N
0.886
Aquca_022_00282
Aquilegia coerulea
Aquca_022_00282
I
0.884
Pm022530
Prunus mume
Pm022530
N
0.878
30136.m001048
Ricinus communis
30136.m001048
N
0.877
PGSC0003DMG400028662
Solanum tuberosum
PGSC0003DMG400028662
N
0.871