BRADI3G09690 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G09690 T326729_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.465 0.604
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.465 0.604
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G09690.1 Sox 209 274
BRADI3G09690.1 Sox 329 395
BRADI3G09690.1 Sox 454 522

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KUCA_T00006060001 Kuraishia capsulata KUCA_T00006060001 I 0.000
PV04_10508 Capronia semiimmersa PV04_10508 N 0.000
PV06_08608 Exophiala oligosperma PV06_08608 N 0.000
PV07_08622 Cladophialophora immunda PV07_08622 N 0.000
PV09_04130 Verruconis gallopava PV09_04130 N 0.000