HMGB4 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh2_kg.3__3350__AT2G17560.1 T329858_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.672 0.725
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3350__AT2G17560.1 Sox 35 104

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017208 Ailuropoda melanoleuca ENSAMEG00000017208 I 0.000
ENSMMUG00000003136 Macaca mulatta ENSMMUG00000003136 I 0.000
ENSPANG00000021858 Papio anubis ENSPANG00000021858 I 0.000
ENSPFOG00000003939 Poecilia formosa ENSPFOG00000003939 I 0.000
ENSSTOG00000011253 Ictidomys tridecemlineatus ENSSTOG00000011253 I 0.000
mbd2 Danio rerio ENSDARG00000075952 I 0.000
MBD2 Sus scrofa ENSSSCG00000004528 I 0.000
Mbd2 Rattus norvegicus ENSRNOG00000011853 I 0.000
MBD2 Pan troglodytes ENSPTRG00000010033 I 0.000
MBD2 Otolemur garnettii ENSOGAG00000008028 I 0.000
MBD2 Oryctolagus cuniculus ENSOCUG00000021080 I 0.000
Mbd2 Mus musculus ENSMUSG00000024513 D 0.000
MBD2 Monodelphis domestica ENSMODG00000011041 I 0.000
MBD2 Loxodonta africana ENSLAFG00000014135 I 0.000
MBD2 Gorilla gorilla ENSGGOG00000013402 I 0.000
MBD2 Homo sapiens ENSG00000134046 D 0.000
MBD2 Dasypus novemcinctus ENSDNOG00000033421 I 0.000
mbd2.S Xenopus laevis XB-GENE-493780 I 0.000