PDE_01613 (Penicillium oxalicum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PDE_01613 T331805_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.483 0.391
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.483 0.391
Sox15
M03973_2.00 		Drosophila melanogaster
WYTGTTCGGTD
HACCGAACARW		 SELEX
Nitta et al.(2015)
Sox15_1 		0.420 0.304
Sox15
M03974_2.00 		Drosophila melanogaster
VACAATDNCATTGTN
NACAATGNHATTGTB		 SELEX
Nitta et al.(2015)
Sox15_2 		0.420 0.304
Sox15
M06450_2.00 		Drosophila melanogaster
RWACAATR
YATTGTWY		 B1H
Zhu et al.(2011)
Sox15_SANGER_5_FBgn0005613 		0.420 0.304
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.418 0.348
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.418 0.348
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.418 0.348
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.418 0.348
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.418 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPS26675 Sox 160 228

Links

Other Sox family TFs
Other Penicillium oxalicum TFs

355 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.000
Bo2g133550 Brassica oleracea Bo2g133550 I 0.000
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.000
Bra022149 Brassica rapa Bra022149 I 0.000
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.000
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.000
Ca_07908 Cicer arietinum Ca_07908 N 0.000
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.000
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N 0.000
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.000
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.000
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.000
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.000