Bostr.14419s0059 (Boechera stricta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Bostr.14419s0059 T250584_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.963 0.914
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.963 0.914
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.963 0.914
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.14419s0059.1.p MADF 314 386

Links

Other MADF family TFs
Other Boechera stricta TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.965
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.963
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.948
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.948
Bo2g133550 Brassica oleracea Bo2g133550 I 0.909
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.902
Bra022149 Brassica rapa Bra022149 I 0.900
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N 0.830
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.826
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.821
Bo7g077820 Brassica oleracea Bo7g077820 I 0.812