Al_scaffold_0008_21 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Al_scaffold_0008_21 T247833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G47660
M02266_2.00 		Arabidopsis thaliana
RCGGTAAW
WTTACCGY		 PBM
Weirauch et al.(2014)
pTH7911 		0.962 0.957
AT5G47660
M06980_2.00 		Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY		 Dap-seq
OMalley et al.(2016)
AT5G47660_col_a 		0.962 0.957
AT5G47660
M06981_2.00 		Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW		 Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a 		0.962 0.957
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_21 MADF 308 379

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.965
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.962
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.938
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.938
Bo2g133550 Brassica oleracea Bo2g133550 I 0.893
Bra022149 Brassica rapa Bra022149 I 0.893
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.884
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.822
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.822
Ca_07908 Cicer arietinum Ca_07908 N 0.822
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.821
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.820
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N 0.815