POPTR_0003s13780 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0003s13780 T332122_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.514 0.702
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.514 0.702
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s13780.1 Sox 122 190
POPTR_0003s13780.1 Sox 240 306
POPTR_0003s13780.1 Sox 365 433

Links

Other Sox family TFs
Other Populus trichocarpa TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000824 Ricinus communis 30054.m000824 N
Al_scaffold_0001_3341 Arabidopsis lyrata Al_scaffold_0001_3341 N
AMTR_s00002p00211460 Amborella trichopoda AMTR_s00002p00211460 N
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N
AT1G32700 Arabidopsis thaliana AT1G32700 N
AT4G17900 Arabidopsis thaliana AT4G17900 N
AT5G46710 Arabidopsis thaliana AT5G46710 N
BGIOSGA005806 Oryza indica BGIOSGA005806 N
Bo1g018010 Brassica oleracea Bo1g018010 N
Bo5g049240 Brassica oleracea Bo5g049240 N
Bo7g075640 Brassica oleracea Bo7g075640 N
Bo7g105550 Brassica oleracea Bo7g105550 N
Bo8g028900 Brassica oleracea Bo8g028900 N
Bo8g049810 Brassica oleracea Bo8g049810 N
Bostr.30275s0258 Boechera stricta Bostr.30275s0258 N
Bostr.3359s0088 Boechera stricta Bostr.3359s0088 N
Bra012632 Brassica rapa Bra012632 N
Bra013266 Brassica rapa Bra013266 N
Bra017531 Brassica rapa Bra017531 N
Bra021029 Brassica rapa Bra021029 N
Bra023280 Brassica rapa Bra023280 N
Bra025003 Brassica rapa Bra025003 N
Bra035494 Brassica rapa Bra035494 N
Cagra.3356s0083 Capsella grandiflora Cagra.3356s0083 N
Cagra.4962s0001 Capsella grandiflora Cagra.4962s0001 N
Carubv10005524m.g Capsella rubella Carubv10005524m.g N
Carubv10009979m.g Capsella rubella Carubv10009979m.g N
Carubv10027053m.g Capsella rubella Carubv10027053m.g N
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N
Ca_11505 Cicer arietinum Ca_11505 N
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N
Ciclev10032089m.g Citrus clementina Ciclev10032089m.g N
Cla016461 Citrullus lanatus Cla016461 N
Cucsa.313040 Cucumis sativus Cucsa.313040 N
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N
evm.TU.supercontig_43.104 Carica papaya evm.TU.supercontig_43.104 N
fgenesh1_pg.scaffold_102000043 Physcomitrella patens fgenesh1_pg.scaffold_102000043 N
fgenesh2_kg.7__2515__AT4G17900.1 Arabidopsis lyrata fgenesh2_kg.7__2515__AT4G17900.1 N
gene02186-v1.0-hybrid Fragaria vesca gene02186-v1.0-hybrid N
GLYMA01G02180 Glycine max GLYMA01G02180 N
GLYMA01G11390 Glycine max GLYMA01G11390 N
GLYMA01G44430 Glycine max GLYMA01G44430 N
GLYMA08G36641 Glycine max GLYMA08G36641 N
GLYMA09G33770 Glycine max GLYMA09G33770 N
GLYMA11G01100 Glycine max GLYMA11G01100 N
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N
Gorai.004G184500 Gossypium raimondii Gorai.004G184500 N
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N
Gorai.007G032400 Gossypium raimondii Gorai.007G032400 N
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N
Gorai.013G184000 Gossypium raimondii Gorai.013G184000 N
GRMZM2G091044 Zea mays GRMZM2G091044 N
GSMUA_Achr2G18160_001 Musa acuminata GSMUA_Achr2G18160_001 N
GSMUA_Achr5G03420_001 Musa acuminata GSMUA_Achr5G03420_001 N
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N
LPERR02G23300 Leersia perrieri LPERR02G23300 N
Lus10000482.g Linum usitatissimum Lus10000482.g N
Lus10000952.g Linum usitatissimum Lus10000952.g N
Lus10002700.g Linum usitatissimum Lus10002700.g N
Lus10004577.g Linum usitatissimum Lus10004577.g N
Lus10030968.g Linum usitatissimum Lus10030968.g N
Lus10040082.g Linum usitatissimum Lus10040082.g N
MDP0000133007 Malus domestica MDP0000133007 N
MDP0000133008 Malus domestica MDP0000133008 N
MDP0000225862 Malus domestica MDP0000225862 N
mgf006925m Mimulus guttatus mgf006925m N
mgf023930m Mimulus guttatus mgf023930m N
MLOC_59330 Hordeum vulgare MLOC_59330 N
MLOC_63157 Hordeum vulgare MLOC_63157 N
MTR_5g007230 Medicago truncatula MTR_5g007230 N
MTR_5g030130 Medicago truncatula MTR_5g030130 N
MTR_8g066820 Medicago truncatula MTR_8g066820 N
OB02G35810 Oryza brachyantha OB02G35810 N
OBART02G28660 Oryza barthii OBART02G28660 N
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N
OLONG_023395 Oryza longistaminata OLONG_023395 N
ONIVA02G31400 Oryza nivara ONIVA02G31400 N
OPUNC02G26310 Oryza punctata OPUNC02G26310 N
orange1.1g026096m.g Citrus sinensis orange1.1g026096m.g N
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N
OS02G0692700 Oryza sativa OS02G0692700 N
Pavir.Aa01152 Panicum virgatum Pavir.Aa01152 N
Pavir.Ab01769 Panicum virgatum Pavir.Ab01769 N
PGSC0003DMG400009931 Solanum tuberosum PGSC0003DMG400009931 N
PGSC0003DMG400017518 Solanum tuberosum PGSC0003DMG400017518 N
Pm023220 Prunus mume Pm023220 N
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N
PRUPE_ppa011266mg Prunus persica PRUPE_ppa011266mg N
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N
Sb04g031230 Sorghum bicolor Sb04g031230 N
Solyc08g076860.2 Solanum lycopersicum Solyc08g076860.2 N
TCM_015701 Theobroma cacao TCM_015701 N
Thhalv10001013m.g Eutrema salsugineum Thhalv10001013m.g N
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N
Thhalv10026159m.g Eutrema salsugineum Thhalv10026159m.g N
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N