Sb04g009610 (Sorghum bicolor)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Sb04g009610 T332415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.446 0.614
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.446 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb04g009610.1 Sox 165 230
Sb04g009610.1 Sox 288 354
Sb04g009610.1 Sox 413 481

Links

Other Sox family TFs
Other Sorghum bicolor TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.3.229.1 Nectria haematococca e_gw1.3.229.1 N 0.000
FFUJ_02771 Fusarium fujikuroi FFUJ_02771 N 0.000
FGRRES_16774 Fusarium graminearum FGRRES_16774 N 0.000
FOXG_01726 Fusarium oxysporum FOXG_01726 N 0.000
FPSE_02703 Fusarium pseudograminearum FPSE_02703 N 0.000
FVEG_08094 Fusarium verticillioides FVEG_08094 N 0.000
HMPREF1541_05795 Cyphellophora europaea HMPREF1541_05795 N 0.000
MAM_05716 Metarhizium album MAM_05716 N 0.000
NechaG37522 Fusarium solani NechaG37522 N 0.000
VHEMI02611 Torrubiella hemipterigena VHEMI02611 N 0.000