Bostr.7867s0182 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.7867s0182 T334394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.590 0.785
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.590 0.785
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0182.1.p Sox 138 206
Bostr.7867s0182.1.p Sox 255 321
Bostr.7867s0182.1.p Sox 379 447

Links

Other Sox family TFs
Other Boechera stricta TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_05262 Capronia coronata A1O1_05262 I
A1O3_09505 Capronia epimyces A1O3_09505 I
ACRE_024280 Acremonium chrysogenum ACRE_024280 I
BBA_04574 Beauveria bassiana BBA_04574 I
CCM_05172 Cordyceps militaris CCM_05172 I
CFIO01_04298 Colletotrichum fioriniae CFIO01_04298 I
CGGC5_13803 Colletotrichum gloeosporioides CGGC5_13803 I
CH063_01773 Colletotrichum higginsianum CH063_01773 I
CHGG_08120 Chaetomium globosum CHGG_08120 I
CMQ_3833 Grosmannia clavigera CMQ_3833 I
Cob_11656 Colletotrichum orbiculare Cob_11656 I
CPUR_03952 Claviceps purpurea CPUR_03952 I
CSUB01_10846 Colletotrichum sublineola CSUB01_10846 I
CTHT_0001980 Chaetomium thermophilum CTHT_0001980 I
estExt_Genewise1Plus.C_160104 Neurospora discreta estExt_Genewise1Plus.C_160104 I
F503_03916 Ophiostoma piceae uamh F503_03916 I
FFUJ_00629 Fusarium fujikuroi FFUJ_00629 I
fgenesh1_pg.sca_1_chr1_3_0000774 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000774 I
fgenesh1_pm.C_scaffold_2000244 Cryphonectria parasitica fgenesh1_pm.C_scaffold_2000244 I
FGRRES_00967 Fusarium graminearum FGRRES_00967 I
FOXG_00941 Fusarium oxysporum FOXG_00941 I
FPSE_01459 Fusarium pseudograminearum FPSE_01459 I
FVEG_00574 Fusarium verticillioides FVEG_00574 I
GGTG_10910 Gaeumannomyces graminis GGTG_10910 I
GLRG_10304 Colletotrichum graminicola GLRG_10304 I
HMPREF1624_04479 Sporothrix schenckii HMPREF1624_04479 I
MAC_09429 Metarhizium acridum MAC_09429 I
MAJ_00507 Metarhizium majus MAJ_00507 I
MAM_03975 Metarhizium album MAM_03975 I
MANI_008098 Metarhizium anisopliae MANI_008098 I
MBR_02161 Metarhizium brunneum MBR_02161 I
MGG_16161 Magnaporthe oryzae MGG_16161 I
MGU_04444 Metarhizium guizhouense MGU_04444 I
NCU03417 Neurospora crassa NCU03417 D
NechaG75163 Fusarium solani NechaG75163 I
NEUTE1DRAFT_123378 Neurospora tetrasperma NEUTE1DRAFT_123378 I
OCS_03653 Ophiocordyceps sinensis OCS_03653 I
PDE_06888 Penicillium oxalicum PDE_06888 N
PODANS_3_6090 Podospora anserina PODANS_3_6090 I
PV05_05964 Exophiala xenobiotica PV05_05964 I
PV08_05947 Exophiala spinifera PV08_05947 I
S40285_02170 Stachybotrys chlorohalonata S40285_02170 I
S40288_03199 Stachybotrys chartarum S40288_03199 I
SAPIO_CDS0891 Scedosporium apiospermum SAPIO_CDS0891 N
SMAC_08866 Sordaria macrospora SMAC_08866 I
SPBR_05575 Sporothrix brasiliensis SPBR_05575 I
THITE_2123319 Thielavia terrestris THITE_2123319 I
TRIATDRAFT_162437 Trichoderma atroviride TRIATDRAFT_162437 I
TRIREDRAFT_76039 Trichoderma reesei TRIREDRAFT_76039 I
TRIVIDRAFT_80282 Trichoderma virens TRIVIDRAFT_80282 I
UCRPA7_8449 Togninia minima UCRPA7_8449 I
UV8b_4907 Ustilaginoidea virens UV8b_4907 I
V499_00022 Pseudogymnoascus pannorum V499_00022 I
VDAG_01994 Verticillium dahliae VDAG_01994 I
VHEMI10654 Torrubiella hemipterigena VHEMI10654 I
X797_000152 Metarhizium robertsii X797_000152 I
Z518_09480 Rhinocladiella mackenziei Z518_09480 I