Cagra.3839s0003 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.3839s0003 T334407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.663 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.663 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3839s0003.1.p Sox 140 208
Cagra.3839s0003.1.p Sox 257 323
Cagra.3839s0003.1.p Sox 383 451

Links

Other Sox family TFs
Other Capsella grandiflora TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_04225 Exophiala aquamarina A1O9_04225 N
S40285_07449 Stachybotrys chlorohalonata S40285_07449 N
S40288_03540 Stachybotrys chartarum S40288_03540 N