Lus10001909.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10001909.g T334557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.537 0.681
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.537 0.681
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001909 Sox 174 241
Lus10001909 Sox 292 358
Lus10001909 Sox 420 488

Links

Other Sox family TFs
Other Linum usitatissimum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007988 Calypte anna Aan_R007988 N 0.000
ACEP14936 Atta cephalotes ACEP14936 N 0.000
ACEP21807 Atta cephalotes ACEP21807 N 0.000
Afo_R000495 Aptenodytes forsteri Afo_R000495 N 0.000
Alligator_sinensis_CCG000862.1 Alligator sinensis Alligator_sinensis_CCG000862.1 N 0.000
Brh_R013374 Buceros rhinoceros Brh_R013374 N 0.000
Cflo_02462--XP_391937.2_APIME Camponotus floridanus Cflo_02462--XP_391937.2_APIME N 0.000
Cmyd_10005570 Chelonia mydas Cmyd_10005570 N 0.000
CPIJ006378 Culex quinquefasciatus CPIJ006378 N 0.000
CpipJ_CPIJ006378 Culex pipiens CpipJ_CPIJ006378 N 0.000
ENSAMEG00000018716 Ailuropoda melanoleuca ENSAMEG00000018716 N 0.000
ENSAMXG00000020327 Astyanax mexicanus ENSAMXG00000020327 N 0.000
ENSAPLG00000000714 Anas platyrhynchos ENSAPLG00000000714 N 0.000
ENSCSAG00000003006 Chlorocebus sabaeus ENSCSAG00000003006 N 0.000
ENSECAG00000004630 Equus caballus ENSECAG00000004630 N 0.000
ENSGMOG00000016149 Gadus morhua ENSGMOG00000016149 N 0.000
ENSLACG00000001145 Latimeria chalumnae ENSLACG00000001145 N 0.000
ENSLOCG00000014899 Lepisosteus oculatus ENSLOCG00000014899 N 0.000
ENSMEUG00000000606 Macropus eugenii ENSMEUG00000000606 N 0.000
ENSMEUG00000012966 Macropus eugenii ENSMEUG00000012966 N 0.000
ENSMGAG00000016559 Meleagris gallopavo ENSMGAG00000016559 N 0.000
ENSMODG00000024103 Monodelphis domestica ENSMODG00000024103 N 0.000
ENSMPUG00000001046 Mustela putorius furo ENSMPUG00000001046 N 0.000
ENSMPUG00000005118 Mustela putorius furo ENSMPUG00000005118 N 0.000
ENSNLEG00000002946 Nomascus leucogenys ENSNLEG00000002946 N 0.000
ENSNLEG00000003239 Nomascus leucogenys ENSNLEG00000003239 N 0.000
ENSOANG00000014043 Ornithorhynchus anatinus ENSOANG00000014043 N 0.000
ENSOARG00000010869 Ovis aries ENSOARG00000010869 N 0.000
ENSORLG00000006931 Oryzias latipes ENSORLG00000006931 N 0.000
ENSP00000348460 Macaca fascicularis ENSP00000348460 N 0.000
ENSP00000348460-D1 Bos grunniens ENSP00000348460-D1 N 0.000
ENSP00000405290 Macaca fascicularis ENSP00000405290 N 0.000
ENSPANG00000014704 Papio anubis ENSPANG00000014704 N 0.000
ENSPCAG00000000784 Procavia capensis ENSPCAG00000000784 N 0.000
ENSPFOG00000008940 Poecilia formosa ENSPFOG00000008940 N 0.000
ENSPMAG00000007632 Petromyzon marinus ENSPMAG00000007632 N 0.000
ENSPPYG00000010165 Pongo abelii ENSPPYG00000010165 N 0.000
ENSPSIG00000017052 Pelodiscus sinensis ENSPSIG00000017052 N 0.000
ENSSARG00000014127 Sorex araneus ENSSARG00000014127 N 0.000
ENSSHAG00000011475 Sarcophilus harrisii ENSSHAG00000011475 N 0.000
ENSSSCG00000024473 Sus scrofa ENSSSCG00000024473 N 0.000
ENSSTOG00000003396 Ictidomys tridecemlineatus ENSSTOG00000003396 N 0.000
ENSSTOG00000014736 Ictidomys tridecemlineatus ENSSTOG00000014736 N 0.000
ENSTGUG00000011911 Taeniopygia guttata ENSTGUG00000011911 N 0.000
ENSXMAG00000004213 Xiphophorus maculatus ENSXMAG00000004213 N 0.000
Gfo_R012966 Geospiza fortis Gfo_R012966 N 0.000
HelroG63031 Helobdella robusta HelroG63031 N 0.000
Hsal_10736--XP_391937.2_APIME Harpegnathos saltator Hsal_10736--XP_391937.2_APIME N 0.000
L798_01241 Zootermopsis nevadensis L798_01241 N 0.000
LCUP010821 Lucilia cuprina LCUP010821 N 0.000
LDEC011477 Leptinotarsa decemlineata LDEC011477 N 0.000
MDOA009035 Musca domestica MDOA009035 N 0.000
NEMVEDRAFT_v1g96877 Nematostella vectensis NEMVEDRAFT_v1g96877 N 0.000
NPAS1 Bos taurus ENSBTAG00000015576 N 0.000
NPAS1 Canis familiaris ENSCAFG00000032405 N 0.000
NPAS1 Callithrix jacchus ENSCJAG00000011666 N 0.000
NPAS1 Cavia porcellus ENSCPOG00000023069 N 0.000
npas1 Danio rerio ENSDARG00000015876 N 0.000
NPAS1 Dasypus novemcinctus ENSDNOG00000035321 N 0.000
NPAS1 Felis catus ENSFCAG00000004833 N 0.000
NPAS1 Homo sapiens ENSG00000130751 N 0.000
npas1 Gasterosteus aculeatus ENSGACG00000009494 N 0.000
NPAS1 Gorilla gorilla ENSGGOG00000013398 N 0.000
NPAS1 Microcebus murinus ENSMICG00000006346 N 0.000
NPAS1 Macaca mulatta ENSMMUG00000011330 N 0.000
NPAS1 Monodelphis domestica ENSMODG00000009053 N 0.000
Npas1 Mus musculus ENSMUSG00000001988 N 0.000
NPAS1 Otolemur garnettii ENSOGAG00000012829 N 0.000
NPAS1 Ochotona princeps ENSOPRG00000014860 N 0.000
NPAS1 Pan troglodytes ENSPTRG00000011199 N 0.000
Npas1 Rattus norvegicus ENSRNOG00000015376 N 0.000
NPAS1 Sus scrofa ENSSSCG00000003108 N 0.000
npas1 Takifugu rubripes ENSTRUG00000012318 N 0.000
NPAS1 Tursiops truncatus ENSTTRG00000011416 N 0.000
NPAS3 Choloepus hoffmanni ENSCHOG00000013756 N 0.000
NPAS3 Callithrix jacchus ENSCJAG00000005437 N 0.000
NPAS3 Cavia porcellus ENSCPOG00000006976 N 0.000
Npas3 Dipodomys ordii ENSDORG00000000860 N 0.000
NPAS3 Erinaceus europaeus ENSEEUG00000006528 N 0.000
NPAS3 Echinops telfairi ENSETEG00000016603 N 0.000
NPAS3 Homo sapiens ENSG00000151322 N 0.000
NPAS3 Gallus gallus ENSGALG00000029022 N 0.000
NPAS3 Gorilla gorilla ENSGGOG00000022941 N 0.000
NPAS3 Loxodonta africana ENSLAFG00000007169 N 0.000
NPAS3 Macaca mulatta ENSMMUG00000014839 N 0.000
Npas3 Mus musculus ENSMUSG00000021010 N 0.000
NPAS3 Otolemur garnettii ENSOGAG00000014886 N 0.000
NPAS3 Ochotona princeps ENSOPRG00000008184 N 0.000
NPAS3 Oryzias latipes ENSORLG00000018065 N 0.000
NPAS3 Procavia capensis ENSPCAG00000007391 N 0.000
NPAS3 Pan troglodytes ENSPTRG00000006249 N 0.000
NPAS3 Sorex araneus ENSSARG00000003164 N 0.000
NPAS3 Tupaia belangeri ENSTBEG00000016041 N 0.000
NPAS3 Tursiops truncatus ENSTTRG00000003266 N 0.000
NPAS3 Vicugna pacos ENSVPAG00000001108 N 0.000
npas3 Xenopus tropicalis XB-GENE-999791 N 0.000
NV13641 Nasonia vitripennis NV13641 N 0.000
PHUM613040 Pediculus humanus PHUM613040 N 0.000
Pvit_04747 Pogona vitticeps Pvit_04747 N 0.000
Sakowv30006415m.g Saccoglossus kowalevskii Sakowv30006415m.g N 0.000
SPU_014249 Strongylocentrotus purpuratus SPU_014249 N 0.000
Tal_R006980 Tyto alba Tal_R006980 N 0.000
TC001448 Tribolium castaneum TC001448 N 0.000