GPLIN_000066100 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000066100 T336329_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000066100 Sox 7 59

Links

Other Sox family TFs
Other Globodera pallida TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29599.m000177 Ricinus communis 29599.m000177 I
29739.m003713 Ricinus communis 29739.m003713 I
29769.m000463 Ricinus communis 29769.m000463 I
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I
Aquca_002_01425 Aquilegia coerulea Aquca_002_01425 I
ARF6 Vitis vinifera VIT_10s0003g04100 I
Bo4g136370 Brassica oleracea Bo4g136370 I
Bo6g099440 Brassica oleracea Bo6g099440 I
Bra004125 Brassica rapa Bra004125 I
Bra028110 Brassica rapa Bra028110 I
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I
cassava30265.valid.m1 Manihot esculenta cassava30265.valid.m1 I
cassava30266.valid.m1 Manihot esculenta cassava30266.valid.m1 I
cassava32201.m1 Manihot esculenta cassava32201.m1 I
cassava35541.valid.m1 Manihot esculenta cassava35541.valid.m1 I
chr6.CM0420.80.nd Lotus japonicus chr6.CM0420.80.nd I
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I
Cla009963 Citrullus lanatus Cla009963 I
Cla019844 Citrullus lanatus Cla019844 I
Cucsa.047990 Cucumis sativus Cucsa.047990 I
Cucsa.152170 Cucumis sativus Cucsa.152170 I
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I
GRMZM2G035405 Zea mays GRMZM2G035405 I
GRMZM2G081158 Zea mays GRMZM2G081158 I
GRMZM2G702026 Zea mays GRMZM2G702026 I
GSMUA_Achr11G01610_001 Musa acuminata GSMUA_Achr11G01610_001 I
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I
GSMUA_Achr1G08230_001 Musa acuminata GSMUA_Achr1G08230_001 I
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I
LPERR04G24670 Leersia perrieri LPERR04G24670 I
Lus10007386.g Linum usitatissimum Lus10007386.g I
Lus10010969.g Linum usitatissimum Lus10010969.g I
Lus10031354.g Linum usitatissimum Lus10031354.g I
MDP0000268306 Malus domestica MDP0000268306 I
mgf005961m Mimulus guttatus mgf005961m I
MLOC_14584 Hordeum vulgare MLOC_14584 I
MLOC_66152 Hordeum vulgare MLOC_66152 I
MTR_4g124900 Medicago truncatula MTR_4g124900 I
MTR_5g074840 Medicago truncatula MTR_5g074840 I
MTR_5g076270 Medicago truncatula MTR_5g076270 I
OB06G15720 Oryza brachyantha OB06G15720 I
OB12G25550 Oryza brachyantha OB12G25550 I
orange1.1g001969m.g Citrus sinensis orange1.1g001969m.g I
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I
Pavir.Cb00190 Panicum virgatum Pavir.Cb00190 I
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I
PK26077.1 Cannabis sativa PK26077.1 I
Pm010467 Prunus mume Pm010467 I
Pm027119 Prunus mume Pm027119 I
POPTR_0006s14070 Populus trichocarpa POPTR_0006s14070 I
PRUPE_ppa000708mg Prunus persica PRUPE_ppa000708mg I
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I
SapurV1A.0355s0030 Salix purpurea SapurV1A.0355s0030 I
Sb08g021460 Sorghum bicolor Sb08g021460 I
SELMODRAFT_179736 Selaginella moellendorffii SELMODRAFT_179736 I
SELMODRAFT_430287 Selaginella moellendorffii SELMODRAFT_430287 I
SELMODRAFT_451392 Selaginella moellendorffii SELMODRAFT_451392 I
TCM_029410 Theobroma cacao TCM_029410 I
Traes_7AS_582E3076D Triticum aestivum Traes_7AS_582E3076D I
Traes_7BS_F44A273F8 Triticum aestivum Traes_7BS_F44A273F8 I
Traes_7DS_1948388F8 Triticum aestivum Traes_7DS_1948388F8 I
TRIUR3_32597 Triticum urartu TRIUR3_32597 I
VIT_11s0016g00640 Vitis vinifera VIT_11s0016g00640 I