NEMVEDRAFT_v1g214570 (Nematostella vectensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 NEMVEDRAFT_v1g214570 T340839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx1
M00832_2.00 		Mus musculus
NRGTGTGAANN
NNTTCACACYN		 PBM
Weirauch et al.(2013)
pTH3822 		0.737 0.781
TBX1
M03570_2.00 		Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT		 SELEX
Jolma et al.(2013)
TBX1_1 		0.737 0.781
TBX1
M03571_2.00 		Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT		 SELEX
Jolma et al.(2013)
TBX1_2 		0.737 0.781
TBX1
M03572_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX1_3 		0.737 0.781
TBX1
M03573_2.00 		Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR		 SELEX
Jolma et al.(2013)
TBX1_4 		0.737 0.781
TBX1
M03574_2.00 		Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR		 SELEX
Jolma et al.(2013)
TBX1_5 		0.737 0.781
TBX1
M05821_2.00 		Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV		 SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX 		0.737 0.781
Tbx1
M11386_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX1_07 		0.737 0.781
TBX1
M05822_2.00 		Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH		 SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX 		0.737 0.781
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35086 T-box 1 186

Links

Other T-box family TFs
Other Nematostella vectensis TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000165301 Angiostrongylus costaricensis ACOC_0000165301 N
ALUE_0000981201 Ascaris lumbricoides ALUE_0000981201 N
ANCCAN_08298 Ancylostoma caninum ANCCAN_08298 N
ANCCEY_06495 Ancylostoma ceylanicum ANCCEY_06495 N
ANCDUO_13479 Ancylostoma duodenale ANCDUO_13479 N
ASIM_0001210001 Anisakis simplex ASIM_0001210001 N
ASIM_0001432701 Anisakis simplex ASIM_0001432701 N
ASU_03242 Ascaris suum ASU_03242 N
ASU_13374 Ascaris suum ASU_13374 N
Bm3947 Brugia malayi Bm3947 N
BTMF_0000795401 Brugia timori BTMF_0000795401 N
CBG12345 Caenorhabditis briggsae CBG12345 N
DICVIV_11308 Dictyocaulus viviparus DICVIV_11308 N
DME_0000578001 Dracunculus medinensis DME_0000578001 N
EEL_0000453801 Elaeophora elaphi EEL_0000453801 N
EVEC_0000523501 Enterobius vermicularis EVEC_0000523501 N
GPUH_0001715901 Gongylonema pulchrum GPUH_0001715901 N
Hba_19518 Heterorhabditis bacteriophora Hba_19518 N
HCOI00597600 Haemonchus contortus HCOI00597600 N
HPBE_0000675601 Heligmosomoides bakeri HPBE_0000675601 N
L596_g17870 Steinernema carpocapsae L596_g17870 N
L892_g21047 Steinernema scapterisci L892_g21047 N
LOAG_02128 Loa loa LOAG_02128 N
nDi.2.2.2.g05314 Dirofilaria immitis nDi.2.2.2.g05314 N
nLs.2.1.2.g03126 Litomosoides sigmodontis nLs.2.1.2.g03126 N
nOo.2.0.1.g03279 Onchocerca ochengi nOo.2.0.1.g03279 N
OESDEN_02210 Oesophagostomum dentatum OESDEN_02210 N
OFLC_0000425901 Onchocerca flexuosa OFLC_0000425901 N
Ppa-tlf-1 Pristionchus pacificus PPA12059 N
scaffold259-EXSNAP2012.8 Pristionchus exspectatus scaffold259-EXSNAP2012.8 N
SMUV_0000869101 Syphacia muris SMUV_0000869101 N
TCNE_0000853601 Toxocara canis TCNE_0000853601 N
tlf-1 Caenorhabditis elegans WBGene00006577 N
WBGene00238395 Onchocerca volvulus WBGene00238395 N
WUBG_01280 Wuchereria bancrofti WUBG_01280 N