Alligator_sinensis_CCG022145.1 (Alligator sinensis)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Alligator_sinensis_CCG022145.1 T341013_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx1
M00832_2.00 		Mus musculus
NRGTGTGAANN
NNTTCACACYN		 PBM
Weirauch et al.(2013)
pTH3822 		0.802 0.865
TBX1
M03570_2.00 		Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT		 SELEX
Jolma et al.(2013)
TBX1_1 		0.802 0.865
TBX1
M03571_2.00 		Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT		 SELEX
Jolma et al.(2013)
TBX1_2 		0.802 0.865
TBX1
M03572_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX1_3 		0.802 0.865
TBX1
M03573_2.00 		Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR		 SELEX
Jolma et al.(2013)
TBX1_4 		0.802 0.865
TBX1
M03574_2.00 		Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR		 SELEX
Jolma et al.(2013)
TBX1_5 		0.802 0.865
TBX1
M05821_2.00 		Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV		 SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX 		0.802 0.865
Tbx1
M11386_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX1_07 		0.802 0.865
TBX1
M05822_2.00 		Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH		 SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX 		0.802 0.865
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG022145.1 T-box 1 182

Links

Other T-box family TFs
Other Alligator sinensis TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010744 Calypte anna Aan_R010744 I 0.886
ACYPI001903 Acyrthosiphon pisum ACYPI001903 I 0.791
BGIBMGA013132 Bombyx mori BGIBMGA013132 I 0.737
CapteG226618 Capitella teleta CapteG226618 I 0.764
Cflo_09868--XP_624689.2_APIME Camponotus floridanus Cflo_09868--XP_624689.2_APIME I 0.763
CGI_10008753 Crassostrea gigas CGI_10008753 I 0.812
CLEC006885 Cimex lectularius CLEC006885 I 0.774
DAPPUDRAFT_3881 Daphnia pulex DAPPUDRAFT_3881 I 0.795
ENSACAG00000008549 Anolis carolinensis ENSACAG00000008549 I 0.877
ENSAMEG00000001098 Ailuropoda melanoleuca ENSAMEG00000001098 I 0.824
ENSAMXG00000020444 Astyanax mexicanus ENSAMXG00000020444 I 0.800
ENSBTAP00000015683-D1 Bos grunniens ENSBTAP00000015683-D1 I 0.832
ENSCSAG00000008726 Chlorocebus sabaeus ENSCSAG00000008726 I 0.832
ENSCSAG00000011818 Chlorocebus sabaeus ENSCSAG00000011818 I 0.802
ENSCSAVG00000000786 Ciona savignyi ENSCSAVG00000000786 I 0.809
ENSFALG00000008041 Ficedula albicollis ENSFALG00000008041 I 0.800
ENSFCAG00000005446 Felis catus ENSFCAG00000005446 I 0.802
ENSGALG00000003599 Gallus gallus ENSGALG00000003599 I 0.875
ENSGGOG00000009181 Gorilla gorilla ENSGGOG00000009181 I 0.802
ENSGMOG00000018613 Gadus morhua ENSGMOG00000018613 I 0.800
ENSLACG00000004994 Latimeria chalumnae ENSLACG00000004994 I 0.819
ENSLACG00000016333 Latimeria chalumnae ENSLACG00000016333 I 0.800
ENSMEUG00000007568 Macropus eugenii ENSMEUG00000007568 I 0.833
ENSMEUG00000011624 Macropus eugenii ENSMEUG00000011624 I 0.800
ENSMGAG00000004357 Meleagris gallopavo ENSMGAG00000004357 I 0.859
ENSMMUG00000018529 Macaca mulatta ENSMMUG00000018529 I 0.832
ENSMPUG00000003900 Mustela putorius furo ENSMPUG00000003900 I 0.824
ENSMPUG00000004076 Mustela putorius furo ENSMPUG00000004076 I 0.832
ENSOARG00000013751 Ovis aries ENSOARG00000013751 I 0.775
ENSONIG00000015827 Oreochromis niloticus ENSONIG00000015827 I 0.800
ENSP00000331791-D2 Bos grunniens ENSP00000331791-D2 I 0.802
ENSP00000335191 Macaca fascicularis ENSP00000335191 I 0.832
ENSPANG00000006501 Papio anubis ENSPANG00000006501 I 0.832
ENSPANG00000015763 Papio anubis ENSPANG00000015763 I 0.802
ENSPFOG00000007309 Poecilia formosa ENSPFOG00000007309 I 0.773
ENSPFOG00000009540 Poecilia formosa ENSPFOG00000009540 I 0.800
ENSPFOG00000009621 Poecilia formosa ENSPFOG00000009621 I 0.800
ENSSTOG00000004505 Ictidomys tridecemlineatus ENSSTOG00000004505 I 0.802
ENSSTOG00000011629 Ictidomys tridecemlineatus ENSSTOG00000011629 I 0.832
ENSTGUG00000007382 Taeniopygia guttata ENSTGUG00000007382 I 0.886
ENSTNIG00000014352 Tetraodon nigroviridis ENSTNIG00000014352 I 0.795
fgenesh2_kg.scaffold_118000001 Branchiostoma floridae fgenesh2_kg.scaffold_118000001 I 0.788
GB55445 Apis mellifera GB55445 I 0.770
Gfo_R011877 Geospiza fortis Gfo_R011877 I 0.824
HMEL015536 Heliconius melpomene HMEL015536 I 0.748
Hsal_04471--XP_624689.2_APIME Harpegnathos saltator Hsal_04471--XP_624689.2_APIME I 0.763
KGM_08622 Danaus plexippus KGM_08622 I 0.748
L798_01101 Zootermopsis nevadensis L798_01101 I 0.790
LDEC008541 Leptinotarsa decemlineata LDEC008541 I 0.761
LotgiG104372 Lottia gigantea LotgiG104372 I 0.826
Myotis_brandtii_Tbx10_10030825 Myotis brandtii Myotis_brandtii_Tbx10_10030825 I 0.832
Myotis_brandtii_Tbx1_10021844 Myotis brandtii Myotis_brandtii_Tbx1_10021844 I 0.764
NEMVEDRAFT_v1g214570 Nematostella vectensis NEMVEDRAFT_v1g214570 I 0.771
NEMVEDRAFT_v1g214571 Nematostella vectensis NEMVEDRAFT_v1g214571 I 0.772
NV11904 Nasonia vitripennis NV11904 I 0.767
Ogr08509 Ophisaurus gracilis Ogr08509 I 0.863
PHUM607490 Pediculus humanus PHUM607490 I 0.793
Pvit_15846 Pogona vitticeps Pvit_15846 I 0.800
Pvit_16222 Pogona vitticeps Pvit_16222 I 0.881
Sakowv30001714m.g Saccoglossus kowalevskii Sakowv30001714m.g I 0.793
SMAR009230 Strigamia maritima SMAR009230 I 0.797
TBX1 Dasypus novemcinctus ENSDNOG00000035422 I 0.802
tbx1 Danio rerio ENSDARG00000031891 I 0.800
TBX1 Callithrix jacchus ENSCJAG00000014591 I 0.802
TBX1 Monodelphis domestica ENSMODG00000021176 I 0.800
tbx1 Takifugu rubripes ENSTRUG00000014017 I 0.800
tbx1 Tetraodon nigroviridis ENSTNIG00000016767 I 0.800
TBX1 Taeniopygia guttata ENSTGUG00000008395 I 0.800
Tbx1 Rattus norvegicus ENSRNOG00000001892 I 0.802
TBX1 Procavia capensis ENSPCAG00000010176 I 0.738
tbx1 Xenopus tropicalis XB-GENE-478084 I 0.800
tbx1 Oryzias latipes ENSORLG00000015256 I 0.800
TBX1 Otolemur garnettii ENSOGAG00000003596 I 0.804
TBX1 Homo sapiens ENSG00000184058 D 0.802
Tbx1 Mus musculus ENSMUSG00000009097 D 0.802
tbx1 Gasterosteus aculeatus ENSGACG00000013057 I 0.800
TBX1 Loxodonta africana ENSLAFG00000021555 I 0.802
tbx1.L Xenopus laevis XB-GENE-478088 I 0.800
tbx1.S Xenopus laevis XB-GENE-6254396 I 0.800
Tbx10 Rattus norvegicus ENSRNOG00000017944 I 0.824
TBX10 Pteropus vampyrus ENSPVAG00000008592 I 0.832
TBX10 Pan troglodytes ENSPTRG00000003972 I 0.819
TBX10 Procavia capensis ENSPCAG00000009585 I 0.818
TBX10 Otolemur garnettii ENSOGAG00000000784 I 0.835
Tbx10 Mus musculus ENSMUSG00000037477 I 0.832
TBX10 Monodelphis domestica ENSMODG00000021334 I 0.814
TBX10 Gorilla gorilla ENSGGOG00000011961 I 0.832
TBX10 Homo sapiens ENSG00000167800 I 0.832
TBX10 Felis catus ENSFCAG00000001760 I 0.832
Tbx10 Dipodomys ordii ENSDORG00000010070 I 0.824
TBX10 Canis familiaris ENSCAFG00000011264 I 0.832
TBX10 Bos taurus ENSBTAG00000011816 I 0.796
TC015327 Tribolium castaneum TC015327 I 0.761
tetur04g00890 Tetranychus urticae tetur04g00890 I 0.822
YQE_10853 Dendroctonus ponderosae YQE_10853 I 0.775