LCUP008716 (Lucilia cuprina)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 LCUP008716 T341235_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
byn
M03984_2.00 		Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT		 SELEX
Nitta et al.(2015)
byn_1 		0.912 0.989
byn
M03985_2.00 		Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH		 SELEX
Nitta et al.(2015)
byn_2 		0.912 0.989
byn
M03986_2.00 		Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY		 SELEX
Nitta et al.(2015)
byn_3 		0.912 0.989
byn
M03987_2.00 		Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN		 SELEX
Nitta et al.(2015)
byn_4 		0.912 0.989
byn
M06453_2.00 		Drosophila melanogaster
ADGTGCDA
THGCACHT		 B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723 		0.912 0.989
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.816 0.756
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.816 0.756
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.816 0.756
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.810 0.750
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.810 0.750
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.810 0.750
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.810 0.750
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.810 0.750
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.810 0.750
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.810 0.750
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.810 0.750
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP008716-PA T-box 80 255

Links

Other T-box family TFs
Other Lucilia cuprina TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_07586 Capronia coronata A1O1_07586 N
A1O3_06292 Capronia epimyces A1O3_06292 I
ANIA_11222 Aspergillus nidulans CADANIAG00001045 D
CADAFLAG00009480 Aspergillus flavus CADAFLAG00009480 I
CADAFLAG00012923 Aspergillus flavus CADAFLAG00012923 N
CADANGAG00002855 Aspergillus niger CADANGAG00002855 N
CADANGAG00007590 Aspergillus niger CADANGAG00007590 I
CADANGAG00008033 Aspergillus niger CADANGAG00008033 I
CADANGAG00012401 Aspergillus niger CADANGAG00012401 I
CADANGAG00013253 Aspergillus niger CADANGAG00013253 I
CCM_09227 Cordyceps militaris CCM_09227 I
CFIO01_03642 Colletotrichum fioriniae CFIO01_03642 I
CH063_05562 Colletotrichum higginsianum CH063_05562 N
Cob_05069 Colletotrichum orbiculare Cob_05069 N
e_gw1.00162.87.1 Aspergillus carbonarius e_gw1.00162.87.1 N
FFUJ_11250 Fusarium fujikuroi FFUJ_11250 I
fgenesh1_pg.00129_#_521 Aspergillus carbonarius fgenesh1_pg.00129_#_521 I
fgenesh1_pm.00153_#_158 Aspergillus carbonarius fgenesh1_pm.00153_#_158 I
GGTG_12117 Gaeumannomyces graminis GGTG_12117 N
HMPREF1541_09393 Cyphellophora europaea HMPREF1541_09393 N
M437DRAFT_89333 Aureobasidium melanogenum M437DRAFT_89333 N
NFIA_050220 Neosartorya fischeri CADNFIAG00004271 N
OIDMADRAFT_204080 Oidiodendron maius OIDMADRAFT_204080 I
PMAA_073800 Talaromyces marneffei PMAA_073800 N
PMAA_073800 Penicillium marneffei PMAA_073800 N
PV05_03926 Exophiala xenobiotica PV05_03926 N
PV06_06827 Exophiala oligosperma PV06_06827 N
PV07_06280 Cladophialophora immunda PV07_06280 I
PV07_06957 Cladophialophora immunda PV07_06957 I
PV10_03184 Exophiala mesophila PV10_03184 N
PV11_05497 Exophiala sideris PV11_05497 N
S40288_04988 Stachybotrys chartarum S40288_04988 I
SPBR_02468 Sporothrix brasiliensis SPBR_02468 N
THITE_2132051 Thielavia terrestris THITE_2132051 I
TRIATDRAFT_34766 Trichoderma atroviride TRIATDRAFT_34766 N
TSTA_009670 Talaromyces stipitatus TSTA_009670 N
Z517_10643 Fonsecaea pedrosoi Z517_10643 I
Z519_02517 Cladophialophora bantiana Z519_02517 N