Eucgr.K01483 (Eucalyptus grandis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Eucgr.K01483 T343160_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.868 0.868
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.868 0.868
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.868 0.868
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.838 0.838
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.838 0.838
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.838 0.838
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.838 0.838
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.838 0.838
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.838 0.838
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.838 0.838
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.838 0.838
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.838 0.838
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K01483.1 TBP 40 122
Eucgr.K01483.1 TBP 130 213

Links

Other TBP family TFs
Other Eucalyptus grandis TFs

770 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002619 Ricinus communis 30068.m002619 I
Aquca_020_00034 Aquilegia coerulea Aquca_020_00034 I
Aquca_020_00035 Aquilegia coerulea Aquca_020_00035 I
Bo5g086780 Brassica oleracea Bo5g086780 I
Bostr.3359s0059 Boechera stricta Bostr.3359s0059 I
Bostr.7867s1416 Boechera stricta Bostr.7867s1416 I
Bra010193 Brassica rapa Bra010193 I
Cagra.1443s0001 Capsella grandiflora Cagra.1443s0001 I
Cagra.2350s0100 Capsella grandiflora Cagra.2350s0100 I
Carubv10007613m.g Capsella rubella Carubv10007613m.g I
Carubv10008529m.g Capsella rubella Carubv10008529m.g I
Ciclev10019282m.g Citrus clementina Ciclev10019282m.g I
Eucgr.E01095 Eucalyptus grandis Eucgr.E01095 I
evm.TU.supercontig_37.112 Carica papaya evm.TU.supercontig_37.112 I
gene01851-v1.0-hybrid Fragaria vesca gene01851-v1.0-hybrid I
Gorai.003G073300 Gossypium raimondii Gorai.003G073300 I
Gorai.008G261400 Gossypium raimondii Gorai.008G261400 I
Lus10008285.g Linum usitatissimum Lus10008285.g I
Lus10010148.g Linum usitatissimum Lus10010148.g I
Lus10033251.g Linum usitatissimum Lus10033251.g I
MDP0000266908 Malus domestica MDP0000266908 I
MDP0000658409 Malus domestica MDP0000658409 I
mgf022344m Mimulus guttatus mgf022344m I
NAC014 Arabidopsis thaliana AT1G33060 I
NTL9 Arabidopsis thaliana AT4G35580 D
NTL9 Arabidopsis lyrata fgenesh2_kg.7__521__AT4G35580.1 I
orange1.1g009388m.g Citrus sinensis orange1.1g009388m.g I
PK02019.1 Cannabis sativa PK02019.1 I
Pm029581 Prunus mume Pm029581 I
POPTR_0001s45700 Populus trichocarpa POPTR_0001s45700 I
POPTR_0011s15230 Populus trichocarpa POPTR_0011s15230 I
PRUPE_ppa001291mg Prunus persica PRUPE_ppa001291mg I
SapurV1A.0285s0090 Salix purpurea SapurV1A.0285s0090 I
SapurV1A.0666s0060 Salix purpurea SapurV1A.0666s0060 N
TCM_015584 Theobroma cacao TCM_015584 I
Thhalv10007021m.g Eutrema salsugineum Thhalv10007021m.g I
VIT_02s0025g03020 Vitis vinifera VIT_02s0025g03020 I
VIT_16s0098g00760 Vitis vinifera VIT_16s0098g00760 I