nLs.2.1.2.g02336 (Litomosoides sigmodontis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 nLs.2.1.2.g02336 T343561_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.844 0.844
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.844 0.844
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.844 0.844
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.844 0.844
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.844 0.844
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.844 0.844
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.844 0.844
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.844 0.844
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.844 0.844
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.844 0.844
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.743 0.743
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.743 0.743
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.743 0.743
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t02336-RA TBP 193 275
nLs.2.1.2.t02336-RA TBP 283 366

Links

Other TBP family TFs
Other Litomosoides sigmodontis TFs

733 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL017280 Aedes aegypti AAEL017280 N
AALB003072 Anopheles albimanus AALB003072 N
AARA000452 Anopheles arabiensis AARA000452 N
AATE006796 Anopheles atroparvus AATE006796 N
ACEP26642 Atta cephalotes ACEP26642 N
ACHR005336 Anopheles christyi ACHR005336 N
ACUA025715 Anopheles culicifacies ACUA025715 N
ACYPI006497 Acyrthosiphon pisum ACYPI006497 N
ADAC008556 Anopheles darlingi ADAC008556 N
ADIR002498 Anopheles dirus ADIR002498 N
AEPI003661 Anopheles epiroticus AEPI003661 N
AFAF010393 Anopheles farauti AFAF010393 N
AFUN009891 Anopheles funestus AFUN009891 N
AGAP001786 Anopheles gambiae AGAP001786 N
AMAM004700 Anopheles maculatus AMAM004700 N
AMEC021754 Anopheles melas AMEC021754 N
AMEM013442 Anopheles merus AMEM013442 N
AMIN000696 Anopheles minimus AMIN000696 N
AQUA004105 Anopheles quadriannulatus AQUA004105 N
ASTEI11512 Anopheles stephensi ASTEI11512 N
A_08377 Schistosoma haematobium A_08377 N
BGIBMGA010273 Bombyx mori BGIBMGA010273 N
BGLB000541 Biomphalaria glabrata BGLB000541 I
BXY_0663500 Bursaphelenchus xylophilus BXY_0663500 N
Cflo_01219--XP_395512.3_APIME Camponotus floridanus Cflo_01219--XP_395512.3_APIME N
CGI_10006980 Crassostrea gigas CGI_10006980 I
CLEC012210 Cimex lectularius CLEC012210 N
CPIJ010152 Culex quinquefasciatus CPIJ010152 N
CpipJ_CPIJ010152 Culex pipiens CpipJ_CPIJ010152 N
csin104729 Clonorchis sinensis csin104729 N
D915_06741 Fasciola hepatica D915_06741 N
DAPPUDRAFT_327651 Daphnia pulex DAPPUDRAFT_327651 N
DME_0001005001 Dracunculus medinensis DME_0001005001 N
ECANG7_06547 Echinococcus canadensis ECANG7_06547 I
EmuJ_001157200 Echinococcus multilocularis EmuJ_001157200 I
ENSCHOG00000011802 Choloepus hoffmanni ENSCHOG00000011802 N
estExt_fgenesh2_pg.C_Chr_060255 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_060255 N
EuGene.0000090416 Micromonas pusilla EuGene.0000090416 N
EVEC_0000024601 Enterobius vermicularis EVEC_0000024601 N
fgenesh1_pg.1__154 Bigelowiella natans fgenesh1_pg.1__154 N
GA26236 Drosophila pseudoobscura FBgn0247610 N
GB44899 Apis mellifera GB44899 N
GF23141 Drosophila ananassae FBgn0100135 N
Gfo_R011571 Geospiza fortis Gfo_R011571 N
GG16758 Drosophila erecta FBgn0108988 N
GH15872 Drosophila grimshawi FBgn0123343 N
GI23637 Drosophila mojavensis FBgn0146363 N
GJ24712 Drosophila virilis FBgn0211788 N
GK22507 Drosophila willistoni FBgn0224484 N
GL50803_17540 Giardia lamblia GL50803_17540 I
GM15347 Drosophila sechellia FBgn0170267 N
GPLIN_000967000 Globodera pallida GPLIN_000967000 I
HDID_0000342501 Hymenolepis diminuta HDID_0000342501 I
HHAL005964-PA Halyomorpha halys HHAL005964-PA N
HMEL002206 Heliconius melpomene HMEL002206 N
HmN_000451100 Hymenolepis microstoma HmN_000451100 I
HNAJ_0000082601 Hymenolepis nana HNAJ_0000082601 I
Hsal_01939--XP_395512.3_APIME Harpegnathos saltator Hsal_01939--XP_395512.3_APIME N
ISCW014189 Ixodes scapularis ISCW014189 I
KGM_12579 Danaus plexippus KGM_12579 N
LCUP015823 Lucilia cuprina LCUP015823 N
LDEC011073 Leptinotarsa decemlineata LDEC011073 I
LotgiG131492 Lottia gigantea LotgiG131492 I
MCOS_0000539101 Mesocestoides corti MCOS_0000539101 I
MDOA004559 Musca domestica MDOA004559 N
ML16136a Mnemiopsis leidyi ML16136a N
NV21537 Nasonia vitripennis NV21537 N
Ocbimv22032810m.g Octopus bimaculoides Ocbimv22032810m.g I
osa Drosophila melanogaster FBgn0261885 N
osa Drosophila yakuba FBgn0041640 N
PHUM080380 Pediculus humanus PHUM080380 N
PPAI002183 Phlebotomus papatasi PPAI002183 N
PXEA_0000852601 Protopolystoma xenopodis PXEA_0000852601 N
RPRC005301 Rhodnius prolixus RPRC005301 N
Sakowv30017861m.g Saccoglossus kowalevskii Sakowv30017861m.g I
SBAD_0000668001 Soboliphyme baturini SBAD_0000668001 N
SCUD_0001703701 Schistosoma curassoni SCUD_0001703701 N
SINV22763 Solenopsis invicta SINV22763 N
Sjc_0060650 Schistosoma japonicum Sjc_0060650 N
SMAR003184 Strigamia maritima SMAR003184 I
SMAR006121 Strigamia maritima SMAR006121 I
Smp_156170 Schistosoma mansoni Smp_156170 N
SMTD_0000055001 Schistosoma mattheei SMTD_0000055001 N
SMU15017366 Schmidtea mediterranea SMU15017366 N
SMU15033702 Schmidtea mediterranea SMU15033702 N
SPU_023530 Strongylocentrotus purpuratus SPU_023530 I
SSLN_0000405401 Schistocephalus solidus SSLN_0000405401 I
T265_07301 Opisthorchis viverrini T265_07301 N
TC013586 Tribolium castaneum TC013586 N
tetur02g14160 Tetranychus urticae tetur02g14160 N
tetur02g14180 Tetranychus urticae tetur02g14180 N
TsM_000529300 Taenia solium TsM_000529300 I
TTAC_0000915101 Hydatigera taeniaeformis TTAC_0000915101 I
XP_002934686 Xenopus tropicalis XP_002934686 N
YQE_09239 Dendroctonus ponderosae YQE_09239 N